Job Description P77795 Confidence 100.00% Date Thu Jan 5 12:32:56 GMT 2012 Rank 38 Aligned Residues 225 % Identity 29% Template c2hydB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 Resolution 3.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.
Predicted Secondary structure															.	.																																																												.	.
Query SS confidence															.	.																																																												.	.
Query Sequence		A	V	E	F	D	N	V	S	R	L	Y	G	D	.	.	V	R	A	V	D	G	V	S	I	A	I	K	D	G	E	F	F	S	M	L	G	P	S	G	S	G	K	T	T	C	L	R	L	I	A	G	F	E	Q	L	S	G	G	A	I	S	I	F	G	K	P	A	S	N	L	P	P	W	E	.	.	R	D	V	N
Query Conservation															.	.																																																												.	.
Alig confidence															.	.																																																												.	.
Template Conservation
Template Sequence		R	I	D	I	D	H	V	S	F	Q	Y	N	D	N	E	A	P	I	L	K	D	I	N	L	S	I	E	K	G	E	T	V	A	F	V	G	M	S	G	G	G	K	S	T	L	I	N	L	I	P	R	F	Y	D	V	T	S	G	Q	I	L	I	D	G	H	N	I	K	D	F	L	T	G	S	L	R	N	Q	I	G
Template Known Secondary structure												S		S	S	S			S										T	T								S	T	T	S	S						T	T	T	T	T	S	S			S							T	T			G	G	G	S								T
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.												.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	F	Q	D	Y	A	L	F	P	H	M	S	I	L	D	N	V	A	Y	G	L	M	V	K	G	V	N	K	K	Q	R	H	A	M	A	Q	E	A	L	E	K	V	A	L	G	F	V	H	Q	R	K	P	S	.	.	.	.	.	.	.	.	.	.	.	Q	L	S	G	G	Q	R	Q	R	V	A	I	A	R	A
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.										.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.										.	.	.	.	.	.
Template Sequence		L	V	Q	Q	D	N	I	L	F	S	D	.	T	V	K	E	N	I	L	L	G	.	.	.	.	.	.	R	P	T	A	T	D	E	E	V	V	E	A	A	K	M	A	N	A	H	D	F	I	M	N	L	P	Q	G	Y	D	T	E	V	G	E	R	G	V	K	L	S	G	G	Q	K	Q	R	L	S	I	A	R	I
Template Known Secondary structure					S	S					S	S	.	B						G	G	G	.	.	.	.	.	.		S	S													T	T							T	S	T	T	G	G	G		B			G	G	G	T	T	S
Template Predicted Secondary structure													.										.	.	.	.	.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.							.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	N	E	P	R	V	L	L	L	D	E	P	L	G	A	L	D	L	K	L	R	E	Q	M	Q	L	E	L	K	K	L	Q	Q	S	L	G	I	T	F	I	F	V	T	H	D	Q	G	E	A	L	S	M	S	D	R	V	A	V	F	N	N	G	R	I	E	Q	V	D	S	P	R	D	L	Y	M	R	P	R	T
Query Conservation
Alig confidence																																				.	.																.																										.	.
Template Conservation																																				.	.																.																										.	.
Template Sequence		F	L	N	N	P	P	I	L	I	L	D	E	A	T	S	A	L	D	L	E	S	E	S	I	I	Q	E	A	L	D	V	L	S	K	.	.	D	R	T	T	L	I	V	A	H	R	L	S	T	I	T	.	H	A	D	K	I	V	V	I	E	N	G	H	I	V	E	T	G	T	H	R	E	L	I	A	K	.	.	Q
Template Known Secondary structure							S						S	T	T	T	T																	T	T	.	.	T	S							S	S	G	G	G	T	T	.	T		S							T	T														T	.	.	T
Template Predicted Secondary structure																																				.	.																.																										.	.
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.			.	.	.	.	530	.	.	.	.	.	.	.	.	.	540		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.			.
		229	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	V	A	G	F	V	G	T	S	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	Y	E	H	L	Y	S	I	Q	N	L
Template Known Secondary structure		S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		567	.	.	570	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions