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Job DescriptionP77795
Confidence100.00%DateThu Jan 5 12:32:56 GMT 2012
Rank2Aligned Residues327
% Identity39%Templatec1q1bD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  VEFDNVSRLYGDVRAVDGVSIAIKDGEFFSMLGPSGSGKTTCLRLIAGFEQLSGGAISIFGKPASNLPPWERDVNTVFQD
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Template Sequence  VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS
Template Known Secondary structure 
TT

TT

SGGGSTTTSS


SSTT
TT

SSTT



B
S
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   85....90.........100.........110.........120.........130.........140.........150.........160....
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Query Sequence  YALFPHMSILDNVAYGLMVKGVNKKQRHAMAQEALEKVALGFVHQRKPSQLSGGQRQRVAIARALVNEPRVLLLDEPLGA
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Template Sequence  YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN
Template Known Secondary structure 



TTS
TTTTTTSSSSTTTTTTTTTGGGT
TT
SS



GGGTTTSSSSTTTT

S
BSSTTTT
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   165....170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  LDLKLREQMQLELKKLQQSLGITFIFVTHDQGEALSMSDRVAVFNNGRIEQVDSPRDLYMRPRTPFVAGFVGTSNV. . . .
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Template Sequence  LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLP
Template Known Secondary structure 

TTTTT

S

STT
S
SBSSSS

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   164.....170.........180.........190.........200.........210.........220.........230.........240...
 
   241........250.........260.........270.........280.........290......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . FDGLMAEKLCGMTGSFALRPEHIRLNTPGELQANGTIQAVQYQGAATRFELKLNGG
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Template Sequence  VKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSI
Template Known Secondary structure  TT
SSTT


B

TT

TT

GGG
B
S
S
SS
SS
TT
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   244.....250.........260.........270.........280.........290.........300.........310.........320...
 
   297..300.........310.........320.........330......
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Query Sequence  EKLLVSQANMTGEELPATLTPGQQVMVSWSRDVMVPLVEE
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Template Sequence  RQNLVYRQND. . . . . VVLVEEGATFAIGLPPERCHLFRED
Template Known Secondary structure  SS
S.....




TT


GGG

TT
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   324.....330... ......340.........350........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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