Job Description Q9JMS8 Confidence 98.53% Date Thu Jan 5 12:38:04 GMT 2012 Rank 10 Aligned Residues 66 % Identity 15% Template c3hpgC_ PDB info PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces Resolution 3.28 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		L	H	S	D	Q	G	V	Q	Y	K	S	N	K	Y	K	I	L	L	C	R	Y	E	A	M	Q	S	M	S	R	R	G	N	Y	L	D	N	S	P	M	G	R	V	F	R	R	F	K	S	K	W	L	A	.	K	G	G	Y	G	D	F	S	H	A	V	R	D	I
Query Conservation																																																						.
Alig confidence																																																						.
Template Conservation
Template Sequence		L	Q	S	D	N	G	P	A	F	V	A	E	S	T	Q	L	L	M	K	Y	L	G	I	E	H	T	T	G	I	P	W	N	P	Q	S	Q	A	L	V	E	R	T	H	Q	T	L	K	N	T	L	E	K	L	I	P	M	F	N	A	F	E	S	A	L	A	G	T
Template Known Secondary structure						S																	T						S	S				T	T																				G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions