Job Description P21829 Confidence 99.92% Date Thu Jan 5 11:38:33 GMT 2012 Rank 33 Aligned Residues 139 % Identity 22% Template c3ewiB_ PDB info PDB header:transferase Chain: B: PDB Molecule:n-acylneuraminate cytidylyltransferase; PDBTitle: structural analysis of the c-terminal domain of murine cmp-2 sialic acid synthetase Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.											.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.
Query Sequence		T	T	R	V	I	A	L	D	L	D	G	T	L	L	T	P	K	K	T	L	L	P	.	.	.	.	.	.	.	.	.	.	S	S	I	E	A	L	A	R	A	R	E	A	G	Y	Q	L	I	I	V	T	G	R	H	H	V	A	I	H	P	F	Y	Q	A	L	A	L	D	T	P	A	I	C	C	N	G	T	Y	L
Query Conservation																								.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	K	L	L	V	C	N	I	D	G	C	L	T	N	G	H	I	Y	V	S	G	D	Q	K	E	I	I	S	Y	D	V	K	D	A	I	G	I	S	L	L	K	K	S	G	I	E	V	R	L	I	S	E	R	A	C	S	K	Q	T	L	S	A	L	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															S		S						T	T																					T	T								S	S				T	T	T	T	G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	Y	H	A	K	T	V	L	E	A	D	P	M	P	V	I	K	A	L	Q	L	I	E	M	L	N	E	H	H	I	H	G	L	M	Y	V	D	D	A	M	V	Y	E	H	P	T	G	H	V	I	R	T	S	N	W	A	Q	T	L	P	P	E	Q	R	P	T	F	T	Q	V	A	S	L	A	E	T	A	Q	Q
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	A	V	W	K	F	A	L	T	H	D	D	L	P	Q	L	Q	H	F	G	K	H	V	E	H	E	L	G	L	E	C	E	W	S	W	H	D	Q	V	D	I	A	R	G	G	N	S	K	G	K	R	L	T	K	W	V	E	A	Q	G	W	S	M	E	N	V	V	A	F	G	D	N	F	N	D	I	S	M	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	C	K	T	E	V	S	V	S	D	K	L	A	T	V	D	E	W	R	K	E	M	G	L	C	W	K	E	V	A	Y	L	G	N	E	V	S	D	E	E	C	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S		S													T	T			G	G	G							S	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																								74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		E	A	A	G	T	G	V	A	M	G	N	A	D	D	A	V	K	A	R	A	N	I	V	I	G	D	N	T	T	D	S	.	I	A	Q	F	I	Y	S	H	L	I
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		K	R	V	G	L	S	A	V	P	A	D	A	C	S	G	A	Q	K	A	V	G	Y	I	C	K	C	S	G	G	R	G	A	I	R	E	F	A	E	H	I	F	L
Template Known Secondary structure				S	S						T	T								T		S				S	S		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions