Job Description P21829 Confidence 99.30% Date Thu Jan 5 11:38:33 GMT 2012 Rank 72 Aligned Residues 121 % Identity 31% Template c2b8eB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:cation-transporting atpase; PDBTitle: copa atp binding domain Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		R	V	I	A	L	D	L	D	G	T	L	.	.	.	L	T	P	K	K	T	L	L	P	S	S	I	E	A	L	A	R	A	R	E	A	G	Y	Q	L	I	I	V	T	G	R	H	H	V	A	I	H	P	F	Y	Q	A	L	A	L	D	T	P	A	I	C	C	N	G	T	Y	L	Y	D	Y	H	A	K	T	V	L
Query Conservation													.	.	.
Alig confidence													.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	V	I	V	A	R	N	G	R	V	E	G	I	I	A	V	S	D	T	L	K	E	S	A	K	P	A	V	Q	E	L	K	R	X	G	I	K	V	G	X	I	T	G	D	N	W	R	S	A	E	A	I	S	R	E	L	N	L	D	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T												B		T	T											T	T								S	S												T	T		S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	D	P	M	P	V	I	K	A	L	Q	L	I	E	M	L	N	E	H	H	I	H	G	L	M	Y	V	D	D	A	M	V	Y	E	H	P	T	G	H	V	I	R	T	S	N	W	A	Q	T	L	P	P	E	Q	R	P	T	F	T	Q	V	A	S	L	A	E	T	A	Q	Q	V	N	A	V	W	K	F	A	L
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	D	D	L	P	Q	L	Q	H	F	G	K	H	V	E	H	E	L	G	L	E	C	E	W	S	W	H	D	Q	V	D	I	A	R	G	G	N	S	K	G	K	R	L	T	K	W	V	E	A	Q	G	W	S	M	E	N	V	V	A	F	G	D	N	F	N	D	I	S	M	L	E	A	A	G	T	G	V	A	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.									.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.									.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	E	V	L	P	H	Q	K	.	.	.	.	.	.	S	E	E	V	K	K	L	Q	.	A	K	E	V	V	A	F	V	G	D	G	I	N	D	A	P	A	L	A	Q	A	D	L	G	I	A	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S			T	T			.	.	.	.	.	.								T	.	T	T	S								S	S	T	T							S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.									.
Template SS confidence
																															592	.	.	.	.	.	.	.	600							.	.	.	.	.	.	.	.		.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	A	D	D	A	V	K	A	R	A	N	I	V	I	G	D	N	T	T	D	S	I	A	Q	F	I	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	G	D	I	V	L	I	R	D	D	L	R	D	V	V	A	A	I	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.						S	S			T								T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions