Return to main results Retrieve Phyre Job Id

Job DescriptionP43676
Confidence6.34%DateThu Jan 5 12:02:30 GMT 2012
Rank60Aligned Residues27
% Identity15%Templatec2xgyA_
PDB info PDB header:viral protein/isomeraseChain: A: PDB Molecule:relik capsid n-terminal domain; PDBTitle: complex of rabbit endogenous lentivirus (relik)capsid with2 cyclophilin a
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   454.....460.. .......470.........480
Predicted Secondary structure 

..


Query SS confidence 








. .

















Query Sequence  VAGTMVVDG. . GGLQRKTVTSILMAWVFT
Query Conservation 





   .. 



  
  

  



Alig confidence 








..

















Template Conservation 
 
       

 
       


 


 
Template Sequence  IRGIGLSPEEAAGPRFADARTLYRTWVLE
Template Known Secondary structure  TTTT

TSGGG
Template Predicted Secondary structure 












Template SS confidence 




























   102.......110.........120.........130
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions