Job Description P43676 Confidence 23.87% Date Thu Jan 5 12:02:30 GMT 2012 Rank 9 Aligned Residues 180 % Identity 17% Template c2w2eA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:aquaporin; PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin,2 aqy1, in a closed conformation at ph 3.5 Resolution 1.15 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.						.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		F	V	G	L	D	I	Y	T	G	L	L	L	L	L	A	L	A	F	V	L	F	Y	E	A	I	N	G	F	H	D	T	A	N	A	V	A	A	V	I	Y	.	.	.	.	.	T	R	A	M	Q	P	Q	L	A	V	V	M	A	A	F	F	N	F	F	G	V	L	L	G	G	L	S	V	A	Y	A	I	V	H	M
Query Conservation																																										.	.	.	.	.
Alig confidence																																										.	.	.	.	.													.											.
Template Conservation																																																											.											.
Template Sequence		D	G	G	S	N	P	A	Q	L	I	M	I	S	F	G	F	G	F	G	V	M	V	G	V	F	I	T	Y	R	V	S	G	G	N	L	N	P	A	V	T	L	A	L	V	L	A	R	A	I	P	P	F	R	G	I	L	M	.	A	F	T	Q	I	V	A	G	M	A	.	A	A	G	A	A	S	A	M	T	P	G
Template Known Secondary structure		G	G																										T	T	T	T					S										T	T	S	S									.											.									S		S
Template Predicted Secondary structure																																																											.											.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		L	P	T	D	L	L	L	N	M	G	S	T	H	G	L	A	M	V	F	S	M	L	L	A	A	I	I	W	N	L	G	T	W	F	F	G	L	P	A	S	S	S	H	T	L	I	G	A	I	I	G	I	G	L	T	N	A	L	L	T	G	S	S	V	M	D	A	.	L	N	L	R	E	V	T	K	I	F	S	S
Query Conservation																																																																					.
Alig confidence																																																																					.
Template Conservation
Template Sequence		E	I	A	F	A	N	A	L	G	G	G	A	S	R	T	R	G	L	F	L	E	A	F	G	T	A	I	L	C	L	T	V	L	M	L	A	V	E	K	H	R	A	T	W	F	A	P	F	V	I	G	I	A	L	L	I	A	H	L	I	C	I	Y	Y	T	G	A	G	L	N	P	A	R	S	F	G	P	A	V	A
Template Known Secondary structure		S				S					T	T																									T	T	S		S	T	T	G	G	G																									S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
										159	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.			.	.
Query SS confidence		.	.	.	.	.	.	.	.			.	.
Query Sequence		.	.	.	.	.	.	.	.	L	I	.	.	V	S	P	I	V	G	L	V	I	A	G	G	L	I	F	L	L	R	R	Y	W	S	G	T	K	K
Query Conservation		.	.	.	.	.	.	.	.			.	.
Alig confidence		.	.	.	.	.	.	.	.			.	.
Template Conservation
Template Sequence		A	R	S	F	P	N	Y	H	W	I	Y	W	L	G	P	I	L	G	A	F	L	A	Y	S	I	W	Q	M	W	K	W	L	N	Y	Q	T	T	N
Template Known Secondary structure			T				T	T	T	T																							T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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