Job Description P43676 Confidence 7.87% Date Thu Jan 5 12:02:30 GMT 2012 Rank 36 Aligned Residues 172 % Identity 14% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	H	G	L	A	M	V	F	S	M	L	L	A	A	I	I	W	N	L	G	T	W	F	F	G	L	P	A	S	S	S	H	T	L	I	G	A	I	I	G	I	G	L	T	N	A	L	L	T	G	S	S	V	M	D	A	L	N	L	R	E	V	T	K	I	F	S	S	L	I	V	S	P	I	V	G	L	V	I
Query Conservation
Alig confidence																														.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	G	K	P	.	G	S	L	G	I	V	S	G	A	I	A	G	L	A	A	I	T	P	A	A	G	F	V	D	V	K	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	I	G	L	V
Template Known Secondary structure																											S			.																	T	T	T	T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.																		.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	G	L	I	F	L	L	R	R	Y	W	S	G	T	K	K	R	D	R	I	H	R	I	P	E	D	R	K	K	K	K	G	K	R	K	P	P	F	W	T	R	I	A	L	I	V	S	A	A	G	V	A	F	S	H	G	A	N	D	G	Q	K	G	I	G	L	V	M	L	V	L	V	G	I	A	P	A	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	I	V	C	Y	L	A	M	D	F	R	I	K	K	K	I	D	E	S	L	D	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A	G	L	L	F	G	N	P	Q	L	L	V	S	Q	L	I	A	V	A	S	T	T	A	Y	A	F	L	V	T	L	I
Template Known Secondary structure																T	T				T	T																											S				G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	N	M	N	A	S	G	Y	E	I	T	R	T	R	D	A	V	T	N	F	E	H	Y	L	Q	Q	H	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	K	A	V	D	A	A	V	G	L	R	V	S	S	Q	E	E	Y	V	G	L	D	L	S	Q	H	E	E	V
Template Known Secondary structure										T		S	B
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions