Job Description P43676 Confidence 8.37% Date Thu Jan 5 12:02:30 GMT 2012 Rank 34 Aligned Residues 160 % Identity 13% Template c1ymgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:lens fiber major intrinsic protein; PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution Resolution 2.24 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.								.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.
Query Sequence		L	L	A	L	A	F	V	L	F	Y	E	A	I	N	G	F	H	D	T	A	N	A	V	A	A	V	I	Y	T	R	A	M	Q	P	Q	L	A	V	V	M	A	A	F	F	N	F	F	G	V	L	L	G	G	L	S	V	A	Y	A	I	V	H	M	L	P	.	.	.	.	.	.	.	T	D	L	L	L	N	M	G
Query Conservation																																																																			.	.	.	.	.	.	.
Alig confidence																																										.																									.	.	.	.	.	.	.
Template Conservation																																										.
Template Sequence		L	A	L	A	T	L	V	Q	A	V	G	H	I	S	G	A	H	V	N	P	A	V	T	F	A	F	L	V	G	S	Q	M	S	L	L	R	A	I	C	Y	.	M	V	A	Q	L	L	G	A	V	A	G	A	A	V	L	Y	S	V	T	P	P	A	V	R	G	N	L	A	L	N	T	L	H	P	G	V	S	V	G
Template Known Secondary structure												T	T	T	T					S										T	T	S	S									.																			S		T	T	T		T	T	T	T						T	T	S
Template Predicted Secondary structure																																										.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.							160	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.
Query Sequence		S	T	H	G	L	A	M	V	F	S	M	L	L	A	A	I	I	W	N	L	G	T	W	F	F	G	L	P	A	S	S	S	H	T	L	I	G	A	I	I	G	I	G	L	T	N	A	L	L	T	G	S	S	V	M	D	A	L	N	L	R	E	V	T	K	I	F	S	S	L	.	.	.	.	.	.	I	V	S	P
Query Conservation																																																																								.	.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	T	I	V	E	I	F	L	T	L	Q	F	V	L	C	I	F	A	T	Y	D	E	R	R	N	G	R	L	G	S	V	A	L	A	V	G	F	S	L	T	L	G	H	L	F	G	M	Y	Y	T	G	A	G	M	N	P	A	R	S	F	A	P	A	I	L	T	R	N	F	T	N	H	W	V	Y	W	V	G	P
Template Known Secondary structure																								T	T	S		S																																									T			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	G	L	V	I	A	G	G	L	I	F	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	G	A	G	L	G	S	L	L	Y	D	F	L
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions