Job Description P77615 Confidence 99.78% Date Thu Jan 5 12:31:04 GMT 2012 Rank 63 Aligned Residues 263 % Identity 17% Template d2fvya1 SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 0.92

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.																																				.	.
Query SS confidence																																			.																																				.	.
Query Sequence		A	I	M	V	I	S	T	R	S	T	K	T	T	A	G	N	P	F	F	S	E	V	L	H	A	I	T	A	K	A	E	E	E	.	G	F	D	V	I	L	Q	T	S	H	N	P	A	E	D	L	Q	K	C	E	S	K	I	K	Q	K	M	I	K	G	I	I	M	L	S	.	.	S	P	A	D	E	S	F	F	A
Query Conservation																																			.																																				.	.
Alig confidence										.	.	.	.	.																					.																																				.	.
Template Conservation										.	.	.	.	.
Template Sequence		R	I	G	V	T	I	Y	K	.	.	.	.	.	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E
Template Known Secondary structure								S		.	.	.	.	.	T	T	S																T		T	T									T	T															T	T		S							S	S	G	G	G
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.						.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.							.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.												.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																			.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	D	K	Y	D	I	P	V	V	V	I	G	K	V	E	G	.	.	.	.	.	.	Q	Y	A	H	V	Y	S	V	D	T	D	N	F	G	D	S	I	A	L	T	D	A	L	I	E	S	G	H	Q	.	.	.	.	.	.	.	.	.	.	.	N	I	A	C	L	H	A	P	L	D	V	H	V	S	V	D	R
Query Conservation																			.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R
Template Known Secondary structure					T	T	T							S	S									T		T	T																											G	G	G		T	T		S	S	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		V	N	G	Y	K	Q	S	L	A	A	H	N	I	A	V	R	D	E	W	I	V	D	G	G	Y	T	H	E	T	A	L	K	A	A	R	Q	L	L	S	Q	S	P	.	.	L	P	E	A	V	F	A	T	D	S	L	K	L	M	S	I	Y	R	A	A	A	E	K	N	I	A	I	P	Q	Q	L	A	V	V	G	Y
Query Conservation																																												.	.
Alig confidence																																												.	.																									.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	.	K	S	S	I	P	V	F	G	V
Template Known Secondary structure												T	T												T	T														T	S	T	T	G	G	G							S	S														T	T	.	.	.		T	T	S					S
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.
		280	.	.	.	.	.	.	.	.				.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320										.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure											.	.	.																																	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.																																	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	E	T	L	S	F	I	L	.	.	.	T	P	A	P	G	G	I	D	V	P	T	Q	E	L	G	Q	Q	S	C	E	L	L	F	R	L	I	S	G	K	P	S	P	.	.	.	.	.	.	.	.	.	Q	N	I	T	V	A	T	H	M	T	L	K
Query Conservation											.	.	.																																	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	L	P	E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D	K
Template Known Secondary structure		B												T	S	S		B																						T	T	S		T	T	T	T	S					B	T	T											T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions