Job Description P77615 Confidence 99.94% Date Thu Jan 5 12:31:04 GMT 2012 Rank 31 Aligned Residues 299 % Identity 12% Template d1jx6a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.50

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		T	V	S	R	V	L	N	K	Q	T	N	I	S	P	E	A	R	E	K	V	L	R	A	I	E	E	L	Q	Y	Q	P	N	K	L	A	R	A	L	T	S	S	G	F	D	A	.	.	I	M	V	I	S	T	R	S	T	K	T	T	A	G	N	P	F	F	S	E	V	L	H	A	I	T	A	K	A	E	E	E	G
Query Conservation																																															.	.
Alig confidence												.	.	.	.	.	.						.	.																							.	.										.	.	.	.
Template Conservation												.	.	.	.	.	.						.	.																																		.	.	.	.
Template Sequence		G	Y	Q	E	F	L	D	E	F	P	.	.	.	.	.	.	E	Q	R	N	L	.	.	T	N	A	L	S	E	A	V	R	A	Q	P	V	P	L	S	K	P	T	Q	R	P	I	K	I	S	V	V	Y	P	G	Q	Q	.	.	.	.	V	S	D	Y	W	V	R	N	I	A	S	F	E	K	R	L	Y	K	L	N
Template Known Secondary structure												.	.	.	.	.	.						.	.										S						S	S			S	S												S	.	.	.	.	S																		T	T
Template Predicted Secondary structure												.	.	.	.	.	.						.	.																																		.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.							40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		96	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.
Predicted Secondary structure									.	.	.	.																											.																												.	.	.	.	.	.	.
Query SS confidence									.	.	.	.																											.																												.	.	.	.	.	.	.
Query Sequence		F	D	V	I	L	Q	T	.	.	.	.	S	H	N	P	A	E	D	L	Q	K	C	E	S	K	I	K	Q	K	M	I	K	G	I	I	M	L	.	S	S	P	A	D	E	S	F	F	A	Q	L	D	K	Y	D	I	P	V	V	V	I	G	K	V	E	G	.	.	.	.	.	.	.	Q	Y	A	H	V	Y	S	V
Query Conservation									.	.	.	.																											.																												.	.	.	.	.	.	.
Alig confidence									.	.	.	.																											.																												.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	N	Y	Q	L	N	Q	V	F	T	R	P	N	A	D	I	K	Q	Q	S	L	S	L	M	E	A	L	K	S	K	S	D	Y	L	I	F	T	L	D	T	T	R	H	R	K	F	V	E	H	V	L	D	S	T	N	T	K	L	I	L	Q	N	I	T	T	P	V	R	E	W	D	K	H	Q	P	F	L	Y	V	G
Template Known Secondary structure													T	T																T	T		S							S	S	S	T	T												S							T			S		B	G	G	G	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	D	N	F	G	D	S	I	A	L	T	D	A	L	I	E	S	G	H	Q	N	I	A	C	L	H	A	P	L	D	V	H	V	S	V	D	R	V	N	G	Y	K	Q	S	L	A	A	H	N	I	A	V	R	D	E	W	I	V	D	G	G	Y	T	H	E	T	A	L	K	A	A	R	Q	L	L	S	Q	S	P
Query Conservation
Alig confidence																																																				.
Template Conservation																																																				.
Template Sequence		F	D	H	A	E	G	S	R	E	L	A	T	E	F	G	K	F	F	P	K	H	T	Y	Y	S	V	L	Y	F	S	E	G	Y	I	S	D	V	R	G	D	T	F	I	H	Q	V	N	R	D	N	.	N	F	E	L	Q	S	A	Y	Y	T	K	A	T	K	Q	S	G	Y	D	A	A	K	A	S	L	A	K	H	P
Template Known Secondary structure																			S		T	T									S	T	T																			.												S	S
Template Predicted Secondary structure																																																				.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																												.	.									.
Query SS confidence																																												.	.									.
Query Sequence		L	P	E	A	V	F	A	T	D	S	L	K	L	M	S	I	Y	R	A	A	A	E	K	N	I	A	I	P	Q	Q	L	A	V	V	G	Y	S	N	E	T	L	S	.	.	F	I	L	T	P	A	P	G	.	G	I	D	V	P	T	Q	E	L	G	Q	Q	S	C	E	L	L	F	R	L	I	S	G	K	P	S	P
Query Conservation																																												.	.									.
Alig confidence																											.	.	.															.	.									.
Template Conservation																											.	.	.
Template Sequence		D	V	D	F	I	Y	A	C	S	T	D	V	A	L	G	A	V	D	A	L	A	E	L	G	R	.	.	.	E	D	I	M	I	N	G	W	G	G	G	S	A	E	L	D	A	I	Q	K	G	D	L	D	I	T	V	M	R	M	N	D	D	T	G	I	A	M	A	E	A	I	K	W	D	L	E	D	K	P	V	P
Template Known Secondary structure				S					S	S															T		.	.	.	T	T	S			B		S	B												T	S	S								T																T	T
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	I	T	V	A	T	H	M	T	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	Y	S	G	D	F	E	I	V	T	K
Template Known Secondary structure		S											T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions