Job Description P77615 Confidence 99.90% Date Thu Jan 5 12:31:04 GMT 2012 Rank 46 Aligned Residues 271 % Identity 14% Template c3l49D_ PDB info PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 Resolution 2.30 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	G	F	D	A	I	M	V	I	S	T	R	S	T	K	T	T	A	G	N	P	F	F	S	E	V	L	H	A	I	T	A	K	A	E	E	E	G	F	D	V	I	L	Q	T	S	H	N	P	A	E	D	L	Q	K	C	E	S	K	I	K	Q	K	M	I	K	G	I	I	M	L	S	S	P	A	D	E	S	F
Query Conservation
Alig confidence															.	.	.	.	.
Template Conservation															.	.	.	.	.
Template Sequence		S	L	E	G	K	T	I	G	I	T	A	I	G	.	.	.	.	.	T	D	H	D	W	D	L	K	A	Y	Q	A	Q	I	A	E	I	E	R	L	G	G	T	A	I	A	L	D	A	G	R	N	D	Q	T	Q	V	S	Q	I	Q	T	L	I	A	Q	K	P	D	A	I	I	E	Q	L	G	N	L	D	V	L	N
Template Known Secondary structure				T	T								S		.	.	.	.	.			S																	T	T									T	T																		S						S
Template Predicted Secondary structure															.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40						.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
				137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	F	A	Q	L	D	K	Y	D	I	P	V	V	V	I	G	K	V	E	G	Q	Y	A	H	V	Y	S	V	D	T	D	N	F	G	D	S	I	A	L	T	D	A	L	I	E	S	G	H	Q	N	I	A	C	L	H	A	P	L	D	V	H	V	S	V	D	R	V	N	G	Y	K	Q	S	L	A	A	H	N	I
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		P	W	L	Q	K	I	N	D	A	G	I	P	L	F	T	V	D	T	A	T	P	H	A	I	N	N	T	T	S	N	N	Y	S	I	G	A	E	L	A	L	Q	M	V	A	D	L	G	G	K	G	N	V	L	V	F	N	G	F	Y	S	V	P	V	C	K	I	R	Y	D	Q	M	K	Y	V	L	E	A	F	P	D
Template Known Secondary structure										T	T							S				T	T		S																							T	T							B		S		T	T	S																T		T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		215			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.
Predicted Secondary structure			.	.																										.	.	.																																												.	.
Query SS confidence			.	.																										.	.	.																																												.	.
Query Sequence		A	.	.	V	R	D	E	W	I	V	D	G	G	Y	T	H	E	T	A	L	K	A	A	R	Q	L	L	S	.	.	.	Q	S	P	L	P	E	A	V	F	A	T	D	S	L	K	L	M	S	I	Y	R	A	A	A	E	K	N	I	A	I	P	Q	Q	L	A	V	V	G	Y	S	N	E	T	.	.	L	S	F	I
Query Conservation			.	.																										.	.	.																																												.	.
Alig confidence			.	.																										.	.	.																																												.	.
Template Conservation
Template Sequence		V	K	I	I	E	P	E	L	R	D	V	I	P	N	T	I	Q	S	A	Y	S	N	V	T	D	M	L	T	K	Y	P	N	E	G	D	V	G	A	I	W	A	C	W	D	V	P	M	I	G	A	T	Q	A	L	Q	A	A	G	R	T	D	I	R	T	Y	G	V	D	G	S	P	E	F	V	E	M	V	A	D	P
Template Known Secondary structure						S	S		B				S	S	S																S		S	T	T	S							S	S	S													T	T			S																			T
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	P	A	P	G	G	I	D	V	P	T	Q	E	L	G	Q	Q	S	C	E	L	L	F	R	L	I	S	G	K	P	S	P	Q	N	I	T	V	A	T	H	M	T	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	P	A	G	A	V	A	A	Q	Q	P	S	E	I	G	K	L	A	V	Q	N	V	A	R	H	L	A	G	Q	E	V	K	P	F	T	F	A	P	A	V	L	I	T	K
Template Known Secondary structure		T	S																										T	T					S											S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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