Job Description P77615 Confidence 99.95% Date Thu Jan 5 12:31:04 GMT 2012 Rank 19 Aligned Residues 264 % Identity 21% Template c3kkeA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	M	V	I	S	T	R	S	T	K	T	T	A	G	N	P	F	F	S	E	V	L	H	A	I	T	A	K	A	E	E	E	G	F	D	V	I	L	Q	T	S	H	N	P	A	E	D	L	Q	K	C	E	S	K	I	K	Q	K	M	I	K	G	I	I	M	L	S	S	P	A	D	E	S	F	F	A	Q	L	D
Query Conservation
Alig confidence										.	.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		T	I	G	L	I	V	P	D	.	.	.	.	.	V	N	N	A	V	F	A	D	M	F	S	G	V	Q	M	A	A	S	G	H	S	T	D	V	L	L	G	Q	I	D	A	P	P	R	G	T	Q	Q	L	S	R	L	V	S	E	G	R	V	D	G	V	L	L	Q	R	R	E	D	F	D	D	D	M	L	A	A	V
Template Known Secondary structure								S		.	.	.	.	.	T	T	S	T	T															T	T										S	T	T												S		S	S	S								T	T
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	D	I	P	V	V	V	I	G	K	V	E	G	Q	Y	A	H	V	Y	S	V	D	T	D	N	F	G	D	S	I	A	L	T	D	A	L	I	E	S	G	H	Q	N	I	A	C	L	H	A	P	L	D	V	H	V	S	V	D	R	V	N	G	Y	K	Q	S	L	A	A	H	N	I	A	V	R	D	E	W	I
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		L	E	G	V	P	A	V	T	I	N	S	R	V	P	G	.	.	R	V	G	S	V	I	L	D	D	Q	K	G	G	G	I	A	T	E	H	L	I	T	L	G	H	S	R	I	A	F	I	S	G	T	A	I	H	D	T	A	Q	R	R	K	E	G	Y	L	E	T	L	A	S	A	G	L	R	S	E	A	A	W	V
Template Known Secondary structure			T	T	S						S				T	T	.	.																							T	T			S						S		S	S																		T	T					G	G	G
Template Predicted Secondary structure																	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.						.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.
Query SS confidence																			.	.	.	.	.
Query Sequence		V	D	G	G	Y	T	H	E	T	A	L	K	A	A	R	Q	L	.	.	.	.	.	L	S	Q	S	P	L	P	E	A	V	F	A	T	D	S	L	K	L	M	S	I	Y	R	A	A	A	E	K	N	I	A	I	P	Q	Q	L	A	V	V	G	Y	S	N	E	T	L	S	F	I	L	T	P	A	P	G	G	I	D
Query Conservation																			.	.	.	.	.
Alig confidence																			.	.	.	.	.
Template Conservation
Template Sequence		V	D	A	G	W	E	A	D	A	G	S	A	A	L	N	T	L	Y	R	G	A	N	L	G	K	P	D	G	P	T	A	V	V	V	A	S	V	N	A	A	V	G	A	L	S	T	A	L	R	L	G	L	R	V	P	E	D	L	S	I	V	G	I	N	T	T	W	V	S	D	T	V	Y	P	A	L	T	T	V	R
Template Known Secondary structure						S	S																	T	T	S	T	T	S		S					S	S														T	T			T	T	T	T							S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		V	P	T	Q	E	L	G	Q	Q	S	C	E	L	L	F	R	L	I	S	G	K	P	S	P	Q	N	I	T	.	.	V	A	T	H	M	T	L	K
Query Conservation																														.	.
Alig confidence																														.	.
Template Conservation
Template Sequence		L	P	L	Q	R	L	G	E	V	A	A	D	V	L	M	E	H	L	G	G	R	A	L	T	D	T	V	V	T	Q	P	T	P	E	L	L	V	R
Template Known Secondary structure																				T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions