Job Description P77615 Confidence 100.00% Date Thu Jan 5 12:31:04 GMT 2012 Rank 4 Aligned Residues 315 % Identity 17% Template c3h5tA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum Resolution 2.53 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	T	I	Y	D	I	A	R	V	A	G	V	S	K	S	T	V	S	R	V	L	N	K	Q	T	N	I	S	P	E	A	R	E	K	V	L	R	A	I	E	E	L	Q	Y	Q	P	N	K	L	A	R	A	L	T	S	S	G	F	D	A	I	M	V	I	S	T	R	S	T	K	T	T	A	G	N	P	F	F	S
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	T	L	A	S	I	A	A	K	L	G	I	S	R	T	T	V	S	N	A	Y	N	R	P	E	Q	L	S	A	E	L	R	Q	R	I	L	D	T	A	E	D	M	G	Y	A	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	V	L	L	T	E	D	L	T	Y	A	F	E	D	M	A	S	V
Template Known Secondary structure		T	T										T	S												G	G	G	S															T	T					.	.	.	.	.	.	.	.	.	.	.	.	.						S	S		T	T					S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.														.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	L	H	A	I	T	A	K	A	E	E	E	G	F	D	V	I	L	Q	T	S	H	N	P	A	E	D	L	Q	K	C	E	S	K	I	K	Q	K	M	I	K	G	I	I	M	L	S	S	P	A	D	E	S	F	F	A	Q	L	D	K	Y	D	I	P	V	V	V	I	G	K	V	E	G	Q	Y	A	H	V	Y
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		D	F	L	A	G	V	A	Q	A	A	G	D	T	Q	L	T	L	I	.	P	A	S	P	A	S	S	V	D	H	V	S	A	Q	Q	L	V	N	N	A	A	V	D	G	V	V	I	Y	S	V	A	K	G	D	P	H	I	D	A	I	R	A	R	G	L	P	A	V	I	A	D	Q	P	A	R	E	E	G	M	P	F
Template Known Secondary structure											S	S	S							.						T	T												T				S						S			T	T											T							S	S			S		T	T
Template Predicted Secondary structure																				.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.																	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Query Sequence		S	V	D	T	D	N	F	G	D	S	I	A	L	T	D	A	L	I	E	S	G	H	Q	N	I	A	C	L	H	A	P	L	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	S	V	D	R	V	N	G	Y	K	Q	S	L	A	A	H	N	I	A	V	R	D	E	W	I	V	.	D	G
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation
Template Sequence		I	A	P	N	N	R	K	A	I	A	P	A	A	Q	A	L	I	D	A	G	H	R	K	I	G	I	L	S	I	R	L	D	R	A	N	N	D	G	E	V	T	R	E	R	L	E	N	A	Q	Y	Q	V	Q	R	D	R	V	R	G	A	M	E	V	F	I	E	A	G	I	D	P	G	T	V	P	I	M	E	C	W
Template Known Secondary structure										T										T	T			S									S	S	S													T				T	T																T			G	G	G	S						S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	T	H	E	T	A	L	K	A	A	R	Q	L	L	S	Q	S	P	L	P	E	A	V	F	A	T	D	S	L	K	L	M	S	I	Y	R	A	A	A	E	K	N	I	A	I	P	Q	Q	L	A	V	V	G	Y	S	N	E	T	L	S	F	I	L	T	P	A	P	G	G	I	D	V	P	T	Q	E	L	G	Q
Query Conservation
Alig confidence																																																																	.	.
Template Conservation																																																																	.	.
Template Sequence		I	N	N	R	Q	H	N	F	E	V	A	K	E	L	L	E	T	H	P	D	L	T	A	V	L	C	T	V	D	A	L	A	F	G	V	L	E	Y	L	K	S	V	G	K	S	A	P	A	D	L	S	L	T	G	F	D	G	T	H	M	A	L	A	.	.	R	D	L	T	T	V	I	Q	P	N	K	L	K	G	F
Template Known Secondary structure		S																		T	T							S	S														T	T			T	T	T	T															.	.	T	T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	C	E	L	L	F	R	L	I	S	G	K	P	S	P	Q	N	I	T	V	A	T	H	M	T	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	G	E	T	L	L	K	M	I	D	K	E	Y	V	E	P	E	V	E	L	E	T	S	F	H	P	G
Template Known Secondary structure												T	T					S
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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