Job Description P77615 Confidence 99.88% Date Thu Jan 5 12:31:04 GMT 2012 Rank 50 Aligned Residues 265 % Identity 16% Template c3g1wB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans Resolution 2.02 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.
Predicted Secondary structure																																											.																														.	.
Query SS confidence																																											.																														.	.
Query Sequence		D	A	I	M	V	I	S	T	R	S	T	K	T	T	A	G	N	P	F	F	S	E	V	L	H	A	I	T	A	K	A	E	E	E	G	F	D	V	I	L	Q	.	T	S	H	N	P	A	E	D	L	Q	K	C	E	S	K	I	K	Q	K	M	I	K	G	I	I	M	L	S	S	.	.	P	A	D	E	S	F	F
Query Conservation																																											.																														.	.
Alig confidence											.	.	.	.	.																												.																														.	.
Template Conservation											.	.	.	.	.
Template Sequence		E	T	Y	X	X	I	T	F	Q	.	.	.	.	.	S	G	X	D	Y	W	K	R	C	L	K	G	F	E	D	A	A	Q	A	L	N	V	T	V	E	Y	R	G	A	A	Q	Y	D	I	Q	E	Q	I	T	V	L	E	Q	A	I	A	K	N	P	A	G	I	A	I	S	A	I	D	P	V	E	L	T	D	T	I
Template Known Secondary structure										S	.	.	.	.	.	T	T	S	T																	T									S	S	S																		S							S	S	T	T	T	T
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.						.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		A	Q	L	D	K	Y	D	I	P	V	V	V	I	G	K	V	E	G	Q	Y	A	H	V	Y	S	V	D	T	D	N	F	G	D	S	I	A	L	T	D	A	L	I	E	S	.	G	H	Q	N	I	A	C	L	H	A	P	L	D	V	H	V	S	V	D	R	V	N	G	Y	K	Q	S	L	A	A	H	N	I	A	V
Query Conservation																																														.
Alig confidence																																														.
Template Conservation
Template Sequence		N	K	A	V	D	A	G	I	P	I	V	L	F	D	S	G	A	P	D	S	H	A	H	S	F	L	G	T	N	N	Y	N	A	G	X	N	A	A	Y	K	X	A	E	L	L	D	G	E	G	E	V	A	V	I	T	L	P	N	Q	L	N	H	Q	E	R	T	T	G	F	K	E	T	L	E	A	E	F	P	A	I
Template Known Secondary structure							T	T							S	S			T	T	S			S																						T	T	T										T	T																				T	T
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.				.	.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		R	D	E	W	I	V	D	G	G	Y	T	H	E	T	A	L	K	A	A	R	Q	L	L	S	Q	S	P	L	P	E	A	V	F	A	T	D	S	L	K	L	M	S	I	Y	R	A	A	A	E	K	N	I	A	I	P	Q	Q	L	A	V	V	G	Y	S	N	E	T	L	S	F	I	L	T	P	A	.	.	.	P	G
Query Conservation																																																																													.	.	.
Alig confidence																																																					.	.																							.	.	.
Template Conservation																																																					.	.
Template Sequence		E	V	I	A	V	E	D	G	R	G	D	S	L	H	S	R	R	V	A	H	Q	L	L	E	D	Y	P	N	L	A	G	I	F	A	T	E	A	N	G	G	V	G	V	G	D	A	V	R	L	E	S	.	.	R	A	G	E	I	Q	I	I	S	F	D	T	D	K	G	T	L	D	L	V	D	E	G	I	I	S	A
Template Known Secondary structure										T	T																	T	T							S	S														T	T	.	.		T	T	T	S						S											T	T	S	S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320											.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	D	V	P	T	Q	E	L	G	Q	Q	S	C	E	L	L	F	R	L	I	S	G	K	P	S	P	.	.	.	.	.	.	.	.	.	.	Q	N	I	T	V	A	T	H	M	T	L	K
Query Conservation																													.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	A	Q	G	T	W	N	X	G	Y	W	S	L	T	Y	L	F	H	L	H	H	G	L	T	E	P	Q	I	L	R	E	E	A	P	L	P	L	Y	V	D	T	G	I	T	I	V	T	D
Template Known Secondary structure																							T	T		S			B						B		S		S											T
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions