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Job DescriptionP77615
Confidence99.86%DateThu Jan 5 12:31:04 GMT 2012
Rank53Aligned Residues234
% Identity18%Templatec3e61A_
PDB info PDB header:structural genomics, unknown functionChain: A: PDB Molecule:putative transcriptional repressor of ribose operon; PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90.........100.........110.........120.........130.........140.
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Query Sequence  AIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQTSHNPAEDLQKCESKIKQKMIKGIIMLSSPADESFFAQLD
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Template Sequence  LIGLLLPD. . . . . MSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMIST. . AFNENIIENTL
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S
.....TTSTT


TT
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..GGG
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   61....... .70.........80.........90.........100.........110.........120.. .......130...
 
   142.......150.........160.........170.........180.........190.........200.........210.........220.
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Query Sequence  KYDIPVVVIGKVEGQYAHVYSVDTDNFGDSIALTDALIESGHQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRDEWI
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Template Sequence  TDHIPFVFIDRI. . . . . . . . . . . . NHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQDYKMLEATLL
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GGG
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GGGG
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   134.....140..... ....150.........160.........170.........180.........190.........200.
 
   222.......230.........240.........250.........260.........270.........280.........290.........300.
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Query Sequence  VDGGYTHETALKAARQLLSQSPLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAVVGYSNETLSFILTPAPGGIDVPTQE
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Template Sequence  . . . . . . . . . DNDKKFIDLIKELSIDSIICSNDLLAINVLGIVQRYHFKVPAEIQIIGYDNIPFSEMTYPQITTIDQSAYH
Template Known Secondary structure  .........GST

SSTT

TTTT

SB

GGGGTSSS

B

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   215....220.........230.........240.........250.........260.........270.........280.....
 
   302.......310.........320...
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Query Sequence  LGQQSCELLFRLISGKPSPQNI
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Template Sequence  LGEIAVSQLLALTVKHRGSTRH
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TT


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   286...290.........300.......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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