Job Description P77615 Confidence 99.76% Date Thu Jan 5 12:31:04 GMT 2012 Rank 64 Aligned Residues 259 % Identity 16% Template c3d02A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution Resolution 1.30 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																											.																											.	.
Query SS confidence																																											.																											.	.
Query Sequence		D	A	I	M	V	I	S	T	R	S	T	K	T	T	A	G	N	P	F	F	S	E	V	L	H	A	I	T	A	K	A	E	E	E	G	F	D	V	I	L	Q	.	T	S	H	N	P	A	E	D	L	Q	K	C	E	S	K	I	K	Q	K	M	I	K	G	I	I	M	.	.	L	S	S	P	A	D	E	S	F	F
Query Conservation																																											.																											.	.
Alig confidence											.	.	.	.	.																												.																											.	.
Template Conservation											.	.	.	.	.
Template Sequence		K	T	V	V	N	I	S	K	V	.	.	.	.	.	D	G	X	P	W	F	N	R	X	G	E	G	V	V	Q	A	G	K	E	F	N	L	N	A	S	Q	V	G	P	S	S	T	D	A	P	Q	Q	V	K	I	I	E	D	L	I	A	R	K	V	D	A	I	T	I	V	P	N	D	A	N	V	L	E	P	V	F
Template Known Secondary structure									S		.	.	.	.	.	S	S																		T	T									S	S	S															T	T		S							S
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		A	Q	L	D	K	Y	D	I	P	V	V	V	I	G	K	V	E	G	Q	Y	A	H	V	Y	S	V	D	T	D	N	F	G	D	S	I	A	L	T	.	.	D	A	L	I	E	S	G	H	Q	N	I	A	C	L	H	A	P	L	D	V	H	V	S	V	D	R	V	N	G	Y	K	Q	S	L	A	A	H	N	I	A
Query Conservation																																								.	.
Alig confidence																																								.	.
Template Conservation
Template Sequence		K	K	A	R	D	A	G	I	V	V	L	T	N	E	S	P	G	Q	P	S	A	N	W	D	V	E	I	I	D	N	E	K	F	A	A	E	Y	V	E	H	X	A	K	R	X	G	G	K	G	G	Y	V	I	Y	V	G	S	L	T	V	P	Q	H	N	L	W	A	D	L	L	V	K	Y	Q	K	E	H	Y	P	D
Template Known Secondary structure							T	T							S		T	T		T	T		S					S	S																	T	T	T									S		S	S																				T	T
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		216	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.
Predicted Secondary structure									.																																																																			.	.	.
Query SS confidence									.																																																																			.	.	.
Query Sequence		V	R	D	E	W	I	V	.	D	G	G	Y	T	H	E	T	A	L	K	A	A	R	Q	L	L	S	Q	S	P	L	P	E	A	V	F	A	T	D	S	L	K	L	M	S	I	Y	R	A	A	A	E	K	N	I	A	I	P	Q	Q	L	A	V	V	G	Y	S	N	E	T	L	S	F	I	L	.	.	.	T	P	A
Query Conservation									.																																																																			.	.	.
Alig confidence									.																																																.	.																		.	.	.
Template Conservation																																																									.	.
Template Sequence		X	H	E	V	T	R	R	X	P	V	A	E	S	V	D	D	S	R	R	T	T	L	D	L	X	K	T	Y	P	D	L	K	A	V	V	S	F	G	S	N	G	P	I	G	A	G	R	A	V	K	E	K	R	A	K	.	.	N	K	V	A	V	Y	G	X	X	I	P	S	Q	A	A	S	L	I	K	S	G	D	I
Template Known Secondary structure					S	S	S		B	S		T	T																	T	T							S	S	T	T												T	T		T	.	.	T	T																			T	S	S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	G	I	D	V	P	T	Q	E	L	G	Q	Q	S	C	E	L	L	F	R	L	I	S	G	K	P	S	P	Q	N	I	T	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	G	I	T	Y	D	P	A	T	A	G	Y	A	L	A	A	V	A	S	T	L	L	N	G	K	T	I	E	P	G	F	E	L	K
Template Known Secondary structure																									T	T					T	T				T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions