Job Description P77615 Confidence 99.91% Date Thu Jan 5 12:31:04 GMT 2012 Rank 45 Aligned Residues 246 % Identity 18% Template c2h0aA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus Resolution 2.80 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	M	V	I	S	T	R	S	T	K	T	T	A	G	N	P	F	F	S	E	V	L	H	A	I	T	A	K	A	E	E	E	G	F	D	V	I	L	Q	T	S	H	N	P	A	E	D	L	Q	K	C	E	S	K	I	K	Q	K	M	I	K	G	I	I	M	L	S	S	P	A	D	E	S	F	F	A	Q	L	D
Query Conservation
Alig confidence										.	.	.	.	.																																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation										.	.	.	.	.																																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Sequence		T	V	S	V	L	L	P	F	.	.	.	.	.	V	A	T	E	F	Y	R	R	L	V	E	G	I	E	G	V	L	L	E	Q	R	Y	D	L	A	L	F	P	I	L	S	L	A	R	.	.	.	.	.	.	.	.	.	L	K	Y	L	T	D	G	L	I	L	A	S	Y	D	L	T	R	L	.	.	.	.	.	.
Template Known Secondary structure										.	.	.	.	.	S																	G	G	G	T										S				.	.	.	.	.	.	.	.	.						S						S							.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.																																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.						.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.										.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		K	Y	D	I	P	V	V	V	I	G	K	V	E	G	Q	Y	A	H	V	Y	S	V	D	T	D	N	F	G	D	S	I	A	L	T	D	A	L	I	E	S	G	H	Q	N	I	.	.	A	C	L	H	A	P	L	D	V	H	V	S	V	D	R	V	N	G	Y	K	Q	S	L	A	A	H	N	I	A	V	R	D	E
Query Conservation																																															.	.
Alig confidence																	.	.	.																												.	.
Template Conservation																	.	.	.
Template Sequence		P	T	E	R	P	V	V	L	V	D	A	Q	N	P	R	.	.	.	Y	D	S	V	Y	L	D	N	R	L	G	G	R	L	A	G	A	Y	L	A	R	F	P	G	P	I	F	A	I	A	V	E	E	E	P	D	R	R	T	V	F	A	E	R	M	A	G	F	Q	E	A	L	K	E	A	G	R	P	F	S	P	D
Template Known Secondary structure		S		S	S						S	S			T	T	.	.	.	S							S												T	T	S	S	S										S																					T	T					G	G
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	V	D	G	G	Y	T	H	E	T	A	L	K	A	A	R	Q	L	L	S	Q	S	P	L	P	E	A	V	F	A	T	D	S	L	K	L	M	S	I	Y	R	A	A	A	E	K	N	I	A	I	P	Q	Q	L	A	V	V	G	Y	S	N	E	T	L	S	F	I	L	T	P	A	P	G	G	I	D	V	P	T
Query Conservation
Alig confidence																																																																						.	.
Template Conservation																																																																						.	.
Template Sequence		R	L	Y	I	T	R	H	S	Q	E	G	G	R	L	A	L	R	H	F	L	E	K	A	S	P	P	L	N	V	F	A	G	A	D	Q	V	A	L	G	V	L	E	E	A	V	R	L	G	L	T	P	G	R	D	V	R	V	L	G	F	D	G	H	P	F	A	E	E	.	.	A	G	L	S	T	I	A	Q	P	V
Template Known Secondary structure		G						S	S													T	T			S	S						S	S													T	T	S		T	T	T	T	S							S			T					.	.		T
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		Q	E	L	G	Q	Q	S	C	E	L	L	F	R	L	I	S	G	K	P	S	P	Q	.	N	I	T	V	A	T	H	M	T	L	K
Query Conservation																								.
Alig confidence																								.
Template Conservation
Template Sequence		E	A	M	G	A	R	A	A	Q	L	L	L	E	R	M	R	G	Y	Q	G	P	P	R	E	V	R	F	E	P	V	L	V	E	R
Template Known Secondary structure																	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions