Job Description P77615 Confidence 100.00% Date Thu Jan 5 12:31:04 GMT 2012 Rank 3 Aligned Residues 324 % Identity 30% Template c1bdhA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:protein (purine repressor); PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex Resolution 2.70 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	Y	D	I	A	R	V	A	G	V	S	K	S	T	V	S	R	V	L	N	K	Q	T	N	I	S	P	E	A	R	E	K	V	L	R	A	I	E	E	L	Q	Y	Q	P	N	K	L	A	R	A	L	T	S	S	G	F	D	A	I	M	V	I	S	T	R	S	T	K	T	T	A	G	N	P	F	F	S	E	V
Query Conservation
Alig confidence																																																																				.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.
Template Sequence		T	I	K	D	V	A	K	R	A	N	V	S	T	T	T	V	S	H	V	I	N	K	T	R	F	V	A	E	E	T	R	N	A	V	W	A	A	I	K	E	L	H	Y	S	P	S	A	V	A	R	S	L	A	V	N	H	T	K	S	I	G	L	L	A	T	S	.	.	.	.	.	S	E	A	A	Y	F	A	E	I
Template Known Secondary structure											T	S											T		S																		T													T			S							S		.	.	.	.	.	S	S	S
Template Predicted Secondary structure																																																																				.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		L	H	A	I	T	A	K	A	E	E	E	G	F	D	V	I	L	Q	T	S	H	N	P	A	E	D	L	Q	K	C	E	S	K	I	K	Q	K	M	I	K	G	I	I	M	L	S	S	P	A	D	E	.	S	F	F	A	Q	L	D	K	Y	D	I	P	V	V	V	I	G	K	V	E	G	Q	Y	A	H	V	Y	S
Query Conservation																																																					.
Alig confidence																																																					.
Template Conservation
Template Sequence		I	E	A	V	E	K	N	C	F	Q	K	G	Y	T	L	I	L	G	N	A	W	N	N	L	E	K	Q	R	A	Y	L	S	M	M	A	Q	K	R	V	D	G	L	L	V	M	C	S	E	Y	P	E	P	L	L	A	M	L	E	E	Y	R	H	I	P	M	V	V	M	D	W	G	E	A	K	A	D	F	T	D	A
Template Known Secondary structure												T	T									T	T															T	T		S							S												T	T	T	T	S						S		S	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	T	D	N	F	G	D	S	I	A	L	T	D	A	L	I	E	S	G	H	Q	N	I	A	C	L	H	A	P	L	D	V	H	V	S	V	D	R	V	N	G	Y	K	Q	S	L	A	A	H	N	I	A	V	R	D	E	W	I	V	D	G	G	Y	T	H	E	T	A	L	K	A	A	R	Q	L	L	S	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	D	N	A	F	E	G	G	Y	M	A	G	R	Y	L	I	E	R	G	H	R	E	I	G	V	I	P	G	P	L	E	R	N	T	G	A	G	R	L	A	G	F	M	K	A	M	E	E	A	M	I	K	V	P	E	S	W	I	V	Q	G	D	F	E	P	E	S	G	Y	R	A	M	Q	Q	I	L	S	Q	P
Template Known Secondary structure																				T	T			S								T	T	S																	T	T					G	G	G	B					S	S													S	S	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		P	L	P	E	A	V	F	A	T	D	S	L	K	L	M	S	I	Y	R	A	A	A	E	K	N	I	A	I	P	Q	Q	L	A	V	V	G	Y	S	N	E	T	L	S	F	I	L	T	P	A	P	G	G	I	D	V	P	T	Q	E	L	G	Q	Q	S	C	E	L	L	F	R	L	I	S	G	K	P	S	.	P	Q
Query Conservation																																																																															.
Alig confidence																																																																															.
Template Conservation
Template Sequence		H	R	P	T	A	V	F	C	G	G	D	I	M	A	M	G	A	L	C	A	A	D	E	M	G	L	R	V	P	Q	D	V	S	L	I	G	Y	D	N	V	R	N	A	R	Y	F	T	P	A	L	T	T	I	H	Q	P	K	D	S	L	G	E	T	A	F	N	M	L	L	D	R	I	V	N	K	R	E	E	P	Q
Template Known Secondary structure		S			S					S	S														T	T			T	T	T	T										T	T	G	G	G	S	S	S																										T				S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	T	V	A	T	H	M	T	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	E	V	H	P	R	L	I	E	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions