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Job DescriptionP0AAI1
Confidence98.84%DateThu Jan 5 11:12:59 GMT 2012
Rank85Aligned Residues189
% Identity20%Templatec3auyB_
PDB info PDB header:recombinationChain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: crystal structure of rad50 bound to adp
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20 .........30.........40.........50.........60.........70.........80.........90
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Query Sequence  LLLNAVSKH. YAENIVLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGLETPTAGDVLAGTTPLAEIQEDTRMMFQDAR
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Template Sequence  MILKEIRMNNFKS. . . HVNSRIKFEKG. IVAIIGENGSGKSSIFEAVFFALFGAGSFNYDTIITKGKKSVYVELDFEVNG
Template Known Secondary structure  TT...

S.
TTSS
S



GGGTB
TT
STT
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   3......10..... ....20...... ...30.........40.........50.........60.........70........
 
   91........100.........110.........120.........130.........140........
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Query Sequence  LLPWKSVIDNVGLGLKGQWRDAARRALAAVGLENRAGEWPAALSGGQKQRVALARALI. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NNYKIIREYDSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLETVAKLLGID
Template Known Secondary structure  TTTT
S
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TTS
T
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   80.........90.........100.........110.........120.........130.........140.........150.........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EFEKCYQKMGEIVKEYEKRLERIEGELNYNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEF
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TTTTTTTTTT
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   160.........170.........180.........190.........200.........210.........220.........230.........
 
   149150.........160.........170.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HRPGLLLLDEPLGALDALTRLEMQDLIVS
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Template Sequence  DLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK
Template Known Secondary structure  T
S
STTTTTGGGS
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SSTTTT

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   887..890.........900.........910.........920.........930.........940.........950.........960......
 
   178.180.........190.........200.......
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Query Sequence  LWQEHGFTVLLVTHDVSEAVAMADRVLLIE
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Template Sequence  . . VKSIPQMIIITHHRE. LEDVADVIINVK
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GG.GGGG
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   967..970.........980. ........990...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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