Job Description P0AAI1 Confidence 98.77% Date Thu Jan 5 11:12:59 GMT 2012 Rank 87 Aligned Residues 201 % Identity 19% Template c2o8bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair Resolution 2.75 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.						.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		N	Q	G	T	P	L	L	L	N	A	V	S	K	H	Y	.	.	.	.	.	A	E	N	I	V	L	N	Q	L	D	L	H	I	P	A	G	Q	F	V	A	V	V	G	R	S	G	G	G	K	S	T	L	L	R	L	L	A	G	L	E	T	P	T	A	G	D	V	L	A	G	T	T	P	L	A	E	I	Q	E	D
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.
Template Sequence		K	G	Q	G	R	I	I	L	K	A	S	R	H	A	C	V	E	V	Q	D	E	I	A	F	I	P	N	D	V	Y	F	E	K	D	K	Q	M	F	H	I	I	T	G	P	N	M	G	G	K	S	T	Y	I	R	Q	T	.	.	.	.	.	.	.	.	G	V	I	V	L	M	A	Q	I	G	C	F	V	P	C	E
Template Known Secondary structure		T	T		S										T	T	T	T	T	S	T	T												T	T	S	S								S	T	T	S	S									.	.	.	.	.	.	.	.									T	T			B	S	S	S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.
Template SS confidence
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.									.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		T	R	M	M	F	Q	D	A	R	L	L	P	W	K	S	V	I	D	N	V	G	L	G	L	K	G	Q	W	R	D	A	A	R	R	A	L	A	A	V	G	L	E	N	R	A	G	E	W	P	A	A	L	S	G	G	Q	K	Q	R	V	A	L	A	R	A	L	.	.	I	H	R	P	G	L	L	L	L	D	E	P
Query Conservation																																																																				.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	E	V	S	I	V	D	C	I	L	A	R	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	M	A	E	M	L	E	T	A	S	I	L	R	S	A	T	K	D	S	L	I	I	I	D	E	L
Template Known Secondary structure									S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T			T	T	S						S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.																																						.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.							.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																									.										.	.																.	.	.	.	.	.
Query SS confidence																									.										.	.																.	.	.	.	.	.
Query Sequence		L	G	A	L	D	A	L	T	R	L	E	M	Q	D	L	I	V	S	L	W	Q	E	H	.	G	F	T	V	L	L	V	T	H	.	.	D	V	S	E	A	V	A	M	A	D	R	V	L	L	I	.	.	.	.	.	.	E	E	G	K	I	G	L	D	L	T	V	D	I	P	R	P	R	R	L	G	S	V	R	L
Query Conservation																									.										.	.																.	.	.	.	.	.
Alig confidence																									.										.	.																.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	G	T	S	T	Y	D	G	F	G	L	A	W	A	I	S	E	Y	I	A	T	K	I	G	A	F	C	M	F	A	T	H	F	H	E	L	T	A	L	A	N	Q	I	P	T	V	N	N	L	H	V	T	A	L	T	T	E	E	T	L	T	M	L	Y	Q	V	K	K	G	V	C	D	Q	S	F	G	I	H	V
Template Known Secondary structure				S	S																			T	T											T	T	S	T	T					S	S	S												S	S											S			S
Template Predicted Secondary structure
Template SS confidence
		751	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830
		231	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		A	E	L	.	.	.	E	A	E	V	L	Q	R	V	M	Q	R	G	E	S	E	T	R	L	R
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence		A	E	L	A	N	F	P	K	H	V	I	E	C	A	K	Q	K	A	L	E	L	E	E	F	Q
Template Known Secondary structure					T	T																		T		.
Template Predicted Secondary structure
Template SS confidence
		831	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions