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Job DescriptionP0AAI1
Confidence98.11%DateThu Jan 5 11:12:59 GMT 2012
Rank107Aligned Residues146
% Identity14%Templatec2cvhB_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:dna repair and recombination protein radb; PDBTitle: crystal structure of the radb recombinase
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50.........60.........70.........80.........90.........100.........110...
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Query Sequence  IPAGQFVAVVGRSGGGKSTLLRLLAGLETPTAGDVLAGTTPLAEIQEDTRMMFQDARLLPWKSVIDNVGLGLKGQWRDAA
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Template Sequence  FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPE. . . . . . . . . . . . . . . . . . . . . . . . . . . . RLVQMAET
Template Known Secondary structure  B
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   17..20.........30.........40.........50.........60 ........
 
   114.....120.........130.........140.........150.........160... ......170.........180.....
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Query Sequence  RRALAAVGLENRAGEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL. . . . . . . . DALTRLEMQDLIVSLWQEHGFT
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Template Sequence  RGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIP
Template Known Secondary structure  TT




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   6970.........80.........90.........100.........110.........120.........130.........140........
 
   186...190.... .....200.......
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Query Sequence  VLLVTHDVS. . . . . . . . . . . . . EAVAMADRVLLIE
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Template Sequence  VIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLD
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   149150.........160.........170.........180...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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