Job Description P0AAI1 Confidence 100.00% Date Thu Jan 5 11:12:59 GMT 2012 Rank 2 Aligned Residues 212 % Identity 38% Template c1q1bD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form Resolution 2.80 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.
Query SS confidence																																																																							.	.	.
Query Sequence		L	L	L	N	A	V	S	K	H	Y	A	E	N	I	V	L	N	Q	L	D	L	H	I	P	A	G	Q	F	V	A	V	V	G	R	S	G	G	G	K	S	T	L	L	R	L	L	A	G	L	E	T	P	T	A	G	D	V	L	A	G	T	T	P	L	A	E	I	Q	E	.	.	.	D	T	R	M	M	F	Q	D
Query Conservation																																																																							.	.	.
Alig confidence																																																																							.	.	.
Template Conservation
Template Sequence		V	Q	L	Q	N	V	T	K	A	W	G	E	V	V	V	S	K	D	I	N	L	D	I	H	E	G	E	F	V	V	F	V	G	P	S	G	C	G	K	S	T	L	L	R	M	I	A	G	L	E	T	I	T	S	G	D	L	F	I	G	E	K	R	M	N	D	T	P	P	A	E	R	G	V	G	M	V	F	Q	S
Template Known Secondary structure												T	T													T	T								S	G	G	G	S								T	T	T	S	S				S	S					T	T				T	T			S	S	T	T					B		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.							.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.
Query Sequence		A	R	L	L	P	W	K	S	V	I	D	N	V	G	L	.	.	.	.	.	.	G	L	K	G	Q	W	R	D	A	A	R	R	A	L	A	A	V	G	L	E	N	R	A	G	E	W	P	A	A	L	S	G	G	Q	K	Q	R	V	A	L	A	R	A	L	I	H	R	P	G	L	L	L	L	D	E	P	L	G	A
Query Conservation																	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	A	L	Y	P	H	L	S	V	A	E	N	M	S	F	G	L	K	L	A	G	A	K	K	E	V	I	N	Q	R	V	N	Q	V	A	E	V	L	Q	L	A	H	L	L	D	R	K	P	K	A	L	S	G	G	Q	R	Q	R	V	A	I	G	R	T	L	V	A	E	P	S	V	F	L	L	D	E	P	L	S	N
Template Known Secondary structure						T	T	S						T	T	T	T	T	T	S	S	S	S	T	T	T	T	T	T	T					T	T	G	G	G	T		T	T		S	S					G	G	G	T	T	T	S	S	S	S	T	T					T	T			S				B	S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	A	L	T	R	L	E	M	Q	D	L	I	V	S	L	W	Q	E	H	G	F	T	V	L	L	V	T	H	D	V	S	E	A	V	A	M	A	D	R	V	L	L	I	E	E	G	K	I	G	L	D	L	T	V	D	I	P	R	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	A	A	L	R	V	Q	M	R	I	E	I	S	R	L	H	K	R	L	G	R	T	M	I	Y	V	T	H	D	Q	V	E	A	M	T	L	A	D	K	I	V	V	L	D	A	G	R	V	A	Q	V	G	K	P	L	E	L	Y	H	Y
Template Known Secondary structure				T	T	T															T	T								S										S							T	T														S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions