Job Description P0ADH7 Confidence 83.60% Date Thu Jan 5 11:21:01 GMT 2012 Rank 15 Aligned Residues 128 % Identity 14% Template c2h7fX_ PDB info PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna Resolution 2.70 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.												.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	L	I	L	L	A	Y	R	H	G	M	R	I	S	E	.	.	.	.	.	.	.	.	.	.	.	L	L	D	L	H	Y	Q	D	L	D	L	N	E	G	R	I	N	I	R	R	L	K	N	G	F	S	T	V	H	P	L	R	F	D	E	R	E	A	V	E	R	W	T	Q	E	R	A	N	W	K	G	A	D	R
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	M	L	M	E	T	M	F	F	I	R	F	G	K	M	K	Y	L	K	E	N	E	T	V	G	L	L	T	L	K	N	K	H	I	E	I	S	P	D	K	I	V	I	K	F	V	G	K	D	K	V	S	H	E	F	V	V	H	K	S	N	R	L	Y	K	P	L	L	K	L	T	D	D	S	S	P	E	E	F
Template Known Secondary structure																												S	T	T		B	G	G	G					S	S									G	G	G									T	T	S	T	T										T	T		T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.																				.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	A	I	F	I	S	R	R	G	S	R	L	S	R	Q	Q	A	Y	R	I	I	R	D	A	G	I	E	A	G	T	V	T	Q	T	H	P	H	M	L	R	H	A	C	G	Y	E	L	A	E	R	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	R	L	I	Q	D	Y
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Sequence		L	F	N	K	.	.	.	.	.	.	.	.	L	S	E	R	K	V	Y	E	S	I	K	Q	F	.	.	.	.	.	.	.	.	G	I	R	I	K	D	L	R	T	Y	G	V	N	Y	T	F	L	Y	N	F	W	T	N	V	K	S	I	S	P	L	P	S	P	K	K	L	I	A	L	T	I	K	Q	T	A	E	V
Template Known Secondary structure		T	T	T	T	.	.	.	.	.	.	.	.											G	G	G	.	.	.	.	.	.	.	.	T																										S	S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template SS confidence
		199	200	.	.									.	.	.	.	.	.	.	210	.	.	.	.	.									.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	H	R	N	I	R	H	T	V	R	Y	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	H	T	P	S	I	S	K	R	A	M	A	T
Template Known Secondary structure			T	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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