Job Description P0AD12 Confidence 98.70% Date Thu Jan 5 11:19:39 GMT 2012 Rank 160 Aligned Residues 217 % Identity 11% Template c3r3sD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase; PDBTitle: structure of the ygha oxidoreductase from salmonella enterica Resolution 1.25 Å

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		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.									.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.								60	.	.	.	.	.
Predicted Secondary structure										.																																	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query SS confidence										.																																	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query Sequence		K	K	V	A	I	V	G	L	.	G	W	L	G	M	P	L	A	M	S	L	S	A	R	G	W	Q	V	T	G	S	K	T	T	Q	D	G	V	E	A	A	R	.	.	.	.	.	.	.	.	M	S	G	I	D	S	Y	L	L	R	M	E	P	E	L	V	C	D	.	.	.	.	.	.	.	S	D	D	L	D	A
Query Conservation										.																																	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Alig confidence										.																																	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	K	A	L	V	T	G	G	D	S	G	I	G	R	A	A	A	I	A	Y	A	R	E	G	A	D	V	A	I	N	Y	L	P	A	E	E	E	D	A	Q	Q	V	K	A	L	I	E	E	C	G	R	K	A	V	L	L	P	G	D	L	S	D	E	S	F	A	R	S	L	V	H	K	A	R	E	A	L	G	G	L
Template Known Secondary structure								T	T	T	S													T	T									G	G	G														T	T										T	T	S																T
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	D	A	D	A	L	V	I	T	L	P	A	R	R	S	G	P	G	D	E	F	Y	L	Q	A	V	Q	E	L	V	D	S	A	L	A	H	R	I	P	R	I	I	F	T	S	S	T	S	V	Y	G	D	A	Q	G	T	V	K	E	T	T	P	R	N	P	V	T	N	S	G	R	V	L	E	E	L	E	D	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	L	A	L	V	A	G	K	Q	T	A	I	P	E	I	K	D	L	T	S	E	Q	F	Q	Q	T	F	A	V	N	V	F	A	L	F	W	I	T	Q	E	A	I	P	L	L	P	K	G	A	S	I	I	T	T	S	S	I	Q	A	Y	Q	P	S	P	H	L	L	D	Y	A	A	T	K	A	A	I	L	N	Y
Template Known Secondary structure															S	S	G	G	G														T											G	G	G			T	T									G	G	G	T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		146	.	.	.							150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.																																			.	.																								.	.	.
Query SS confidence						.	.	.	.	.	.																																			.	.																								.	.	.
Query Sequence		L	H	N	L	.	.	.	.	.	.	P	G	T	S	V	D	I	L	R	L	A	G	L	V	G	P	G	R	H	P	G	R	F	F	A	G	K	T	A	P	D	G	E	H	.	.	G	V	N	L	V	H	L	E	D	V	I	G	A	I	T	L	L	L	Q	A	P	K	G	.	.	.	G	H	I	Y	N	I	C	A
Query Conservation						.	.	.	.	.	.																																			.	.																								.	.	.
Alig confidence						.	.	.	.	.	.																																			.	.																								.	.	.
Template Conservation
Template Sequence		S	R	G	L	A	K	Q	V	A	E	K	G	I	R	V	N	I	V	A	P	G	P	I	W	T	A	L	Q	I	S	G	G	Q	T	Q	D	K	I	P	Q	F	G	Q	Q	T	P	M	K	R	A	G	Q	P	A	E	L	A	P	V	Y	V	Y	L	A	S	Q	E	S	S	Y	V	T	A	E	V	H	G	V	C	G
Template Known Secondary structure										G	G	G	T										S	B							T	T	T	S		G	G	G	S	T	T	T	T	T	T	S	T	T	S	S		B		G	G	G	G									S	G	G	G	T	T			S						S	T
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		215	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	H	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	H	L
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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