Job Description P0AD12 Confidence 99.95% Date Thu Jan 5 11:19:39 GMT 2012 Rank 40 Aligned Residues 272 % Identity 14% Template c1t2aC_ PDB info PDB header:structural genomics,lyase Chain: C: PDB Molecule:gdp-mannose 4,6 dehydratase; PDBTitle: crystal structure of human gdp-d-mannose 4,6-dehydratase Resolution 1.84 Å

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		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure										.																																	.	.	.
Query SS confidence										.																																	.	.	.
Query Sequence		K	K	V	A	I	V	G	L	.	G	W	L	G	M	P	L	A	M	S	L	S	A	R	G	W	Q	V	T	G	S	K	T	T	Q	D	G	V	E	A	A	R	.	.	.	M	S	G	I	D	S	Y	L	L	R	M	E	P	E	L	V	C	D	S	D	D	L	D	A	L	M	D	A	D	A	L	V	I	T	L	P
Query Conservation										.																																	.	.	.
Alig confidence										.																																	.	.	.
Template Conservation
Template Sequence		N	V	A	L	I	T	G	I	T	G	Q	D	G	S	Y	L	A	E	F	L	L	E	K	G	Y	E	V	H	G	I	V	R	R	S	S	S	F	N	T	G	R	I	E	H	L	Y	N	M	K	L	H	Y	G	D	L	T	D	S	T	C	L	V	K	I	I	N	E	V	K	P	T	E	I	Y	N	L	G	A	Q	S
Template Known Secondary structure								T	T	T	S													T	T											S	S				T	T	T	G	G	G										T	T															S							S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.										90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.
Query Sequence		A	R	R	S	G	P	G	D	E	F	Y	L	.	.	.	.	.	.	.	.	.	Q	A	V	Q	E	L	V	D	S	A	L	A	H	R	I	P	R	I	I	F	T	S	S	T	S	V	Y	G	D	A	Q	G	T	V	K	E	T	T	P	R	N	P	V	T	N	S	G	R	V	L	E	E	L	E	D	W	L	H	N
Query Conservation														.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	V	K	I	S	F	D	L	A	E	Y	T	A	D	V	D	G	V	G	T	L	R	L	L	D	A	V	K	T	C	G	L	I	N	S	V	K	F	Y	Q	A	S	T	S	E	L	Y	G	K	V	Q	E	I	P	Q	K	E	T	T	P	F	Y	P	R	S	P	Y	G	A	A	K	L	Y	A	Y	W	I	V	V	N
Template Known Secondary structure									S									T													T	T		T	T	T									G	G	G	G	S	S		S	S	S	S	B		T	T	S						S
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		149				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.																.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure			.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	.	.	.	P	G	T	S	V	D	I	L	R	L	A	G	L	V	G	P	G	R	H	P	G	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	G	K	T	A	P	D	G	E	H	G	V	N	L	V	H	L	E	D	V	I	G	A	I	T	L	L	L	Q	A	P	K	G	G	H	I	Y
Query Conservation			.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation																																																																															.
Template Sequence		F	R	E	A	Y	N	L	F	A	V	N	G	I	L	F	N	H	E	S	P	R	R	G	A	N	F	V	T	R	K	I	S	R	S	V	A	K	I	Y	L	G	Q	L	E	C	F	S	L	G	N	L	D	A	K	R	D	W	G	H	A	K	D	Y	V	E	A	M	W	L	M	L	Q	N	D	E	P	E	.	D	F
Template Known Secondary structure																					T	T	S		T	T	S														T	T	S		S					S		T	T																					S	S	S			.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.																								.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query Sequence		N	I	C	A	P	A	H	P	A	R	N	V	F	Y	P	Q	M	A	R	L	L	G	L	E	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	R	N	S	L	D	S	G	K	G	K	I	I	D	G	S	R	I	C	N	E	L	G	F	E	Y	Q	Y	P	.
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation
Template Sequence		V	I	A	T	G	E	V	H	S	V	R	E	F	V	E	K	S	F	L	H	I	G	K	T	I	V	W	E	G	K	N	E	N	E	V	G	R	C	K	E	T	G	K	V	H	V	T	V	D	L	K	Y	Y	R	P	T	E	V	D	F	L	Q	G	D	C	T	K	A	K	Q	K	L	N	W	K	P	R	V	A	F
Template Known Secondary structure						S															T	T	T							S		G	G	G						T	T	T									G	G	G	S		S	S				B			B															S
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
			267	.	.	270	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	P	L	V	M	P	L	E
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		D	E	L	V	R	E	M	V	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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