Job Description P0ACT6 Confidence 99.89% Date Thu Jan 5 11:19:01 GMT 2012 Rank 44 Aligned Residues 189 % Identity 16% Template c3gziA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		M	Q	T	E	A	Q	P	T	R	T	R	I	L	N	A	A	R	E	I	F	S	E	N	G	F	H	S	A	S	M	K	A	I	C	K	S	C	A	I	S	P	G	T	L	Y	H	H	F	I	S	K	E	A	L	I	Q	A	I	I	L	Q	D	Q	E	R	A	L	A	R	F	R	E	P	I	.	.	E	G	I	H
Query Conservation																																																																												.	.
Alig confidence																																																																												.	.
Template Conservation
Template Sequence		R	P	S	G	D	T	Q	N	R	D	K	L	I	L	A	A	R	N	L	F	I	E	R	P	Y	A	Q	V	S	I	R	E	I	A	S	L	A	G	T	D	P	G	L	I	R	Y	Y	F	G	S	K	E	K	L	F	S	T	X	I	H	E	T	A	X	P	V	L	A	Q	L	H	K	A	R	R	E	T	R	Q	E
Template Known Secondary structure																							T	S			S												T	S		T								S	S																										T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	D	Y	M	V	E	S	I	V	S	L	T	H	E	A	F	G	Q	R	A	L	V	V	E	I	M	A	E	G	M	R	N	P	Q	V	A	A	M	L	K	N	K	H	M	T	I	T	E	F	V	A	Q	R	M	R	D	A	Q	Q	K	G	E	I	S	P	D	I	N	T	A	M	T	S	R	L	L	L	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	A	A	L	L	Q	T	Y	Y	S	V	X	S	K	H	P	H	F	P	R	L	X	L	R	I	A	G	L	D	Q	S	L	P	E	N	A	E	V	T	K	A	F	Y	E	V	V	N	F	E	N	I	A	I	F	Q	R	L	K	D	K	N	L	L	K	D	D	V	D	A	H	C	A	Q	L	S	F	F	A	X
Template Known Secondary structure																	S	T	T										T	S		T	T	S	G	G	G											G	G	G			T	T								T	T		B		T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		163	.	.							.	.	.	.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure					.	.	.	.	.	.													.	.	.
Query SS confidence					.	.	.	.	.	.													.	.	.
Query Sequence		T	Y	G	.	.	.	.	.	.	V	L	A	D	I	E	A	E	D	L	A	R	.	.	.	E	A	S	F	A	Q	G	L	R	A	M	I	G	G	I	L
Query Conservation					.	.	.	.	.	.													.	.	.
Alig confidence					.	.	.	.	.	.													.	.	.
Template Conservation
Template Sequence		X	V	F	P	F	I	V	P	E	N	L	L	E	R	V	G	I	E	L	T	P	D	F	L	Q	L	L	A	E	Q	N	T	R	L	L	Q	R	G	L	X
Template Known Secondary structure								S								T	T																								B
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions