Return to main results Retrieve Phyre Job Id

Job DescriptionP38683
Confidence100.00%DateThu Jan 5 11:58:14 GMT 2012
Rank42Aligned Residues264
% Identity13%Templated1tlfa_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution2.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100.........110.........120...
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Query Sequence  AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVA
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Template Sequence  SLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERS. GVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAA
Template Known Secondary structure 

S
TTSTT


TT.
TT

S

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   61........70.........80.........90.........100.. .......110.........120.........130.........
 
   124.....130.........140.........150.........160.........170.........180.........190.........200...
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Query Sequence  SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIA
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Template Sequence  CTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQ. . . IALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAER
Template Known Secondary structure  TTTS
S
TTSSS

TT


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TT
TT


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   140.........150.........160.........170.........180. ........190.........200.........210......
 
   204.....210.........220.........230........ .240.........250.........260.........270........
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Query Sequence  LGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEA. . . . . AMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQM
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Template Sequence  EGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSS. . . CYIPPLTTIKQDF
Template Known Secondary structure 

SSTT


SSSTT

BTTTB

GGGG...GSSS



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   217..220.........230.........240.........250.........260.........270.........280 .........290...
 
   279280.........290.........300.........310....
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Query Sequence  VWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA
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Template Sequence  RLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTT
Template Known Secondary structure  TT



S



SS
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   294.....300.........310.........320.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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