Job Description P38683 Confidence 94.78% Date Thu Jan 5 11:58:14 GMT 2012 Rank 103 Aligned Residues 203 % Identity 14% Template d1dp4a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.00

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.									.	.	.	.	.	.	80	.	.	.	.	.							.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.																.	.	.	.	.	.	.	.													.	.	.	.	.	.
Query SS confidence																.	.	.																.	.	.	.	.	.	.	.													.	.	.	.	.	.
Query Sequence		W	K	L	C	A	L	Y	P	S	L	K	D	S	Y	.	.	.	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	.	.	.	.	.	.	.	.	G	V	D	L	K	V	L	E	A	G	G	Y	.	.	.	.	.	.	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L
Query Conservation																.	.	.																.	.	.	.	.	.	.	.													.	.	.	.	.	.
Alig confidence																.	.	.																.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	V	A	V	V	L	P	L	T	N	T	S	Y	P	W	S	W	A	R	V	G	P	A	V	E	L	A	L	A	R	V	K	A	R	P	D	L	L	P	G	W	T	V	R	M	V	L	G	S	S	E	N	A	A	G	V	C	S	D	T	A	A	P	L	A	A	V	D	L	K	W	E	H	S	P	A	V	F	L
Template Known Secondary structure										S	S				S	T	T																		T		T	T	S	S	T	T											B		T	T	S	S	B		T	T																S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
				108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.							.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																												.	.	.	.	.	.
Query SS confidence		.	.																												.	.	.	.	.	.
Query Sequence		.	.	L	G	S	S	T	T	S	F	P	D	L	Q	K	Q	V	A	S	L	P	V	I	E	L	V	N	A	I	.	.	.	.	.	.	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G
Query Conservation		.	.																												.	.	.	.	.	.
Alig confidence		.	.																												.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	G	C	V	Y	S	A	A	P	V	G	R	F	T	A	H	W	R	V	P	L	L	T	A	G	A	P	A	L	G	I	G	V	K	D	E	Y	A	L	T	T	R	T	G	P	S	H	V	K	L	G	D	F	V	T	A	L	H	R	R	L	G	W	E	H	Q	A	L	V	L	Y	A	D	R	L	G	D	D	R
Template Known Secondary structure					S															T						S					G	G	G	G		T	T	T	S	T	T					S																		T			S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S	P	V	R	I	V	D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	G	R	N	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	C	F	F	I	V	E	G	L	Y	M	R	V	R	E	R	L	N	I	T	V	N	H	Q	E	F	V	E	G	D	P	D	H	Y	P	K	L	L	R	A	V	R	R	K	G	R	V	I	Y	I	C	S	S	P	D	A	F	R	N	L	M	L	L	A	L	N	A	G
Template Known Secondary structure																													T	T		G	G	G													S						S															T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions