Return to main results Retrieve Phyre Job Id

Job DescriptionP38683
Confidence99.95%DateThu Jan 5 11:58:14 GMT 2012
Rank60Aligned Residues251
% Identity14%Templated1byka_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   46...50.........60.........70.........80.........90.........100.........110.........120.....
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Query Sequence  KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVASL
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Template Sequence  VVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFS. . PQLVAEHLGVLKRRNIDGVVLFGFTGITEEM. LAHWQS
Template Known Secondary structure  S
TT
T

TT
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TT

TTT.SGGGSS
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   64.....70.........80.........90.........100... ......110.........120.........130.... .....140
 
   126...130.........140.........150.........160.........170.........180.........190.........200.....
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Query Sequence  PVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALG
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Template Sequence  SLVLLARDAKG. . . FASVCYDDEGAIKILMQRLYDQGHRN. . ISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPV. AALP
Template Known Secondary structure  SSS

SS...

TT


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TTSTTTTTT


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   141........150. ........160.........170....... ..180.........190.........200.........210 ....
 
   206...210.........220.........230.........240.........250.........260.........270.........280.....
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Query Sequence  DNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELA
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Template Sequence  GLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFL. . . HPEIVTVDPGYAEAGRQA
Template Known Secondary structure 
S
SGGG

TT

SSTT

S



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TTSB

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   215....220.........230.........240.........250.........260.........270... ......280.........290.
 
   286...290.........300........
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Query Sequence  VEQAIRQLQGQSVSDNVSPPILV
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Template Sequence  ACQLIAQVTGRSEPQQIIIPATL
Template Known Secondary structure  TTS





B
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   292.......300.........310....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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