Job Description P38683 Confidence 99.85% Date Thu Jan 5 11:58:14 GMT 2012 Rank 71 Aligned Residues 236 % Identity 9% Template c3s99A_ PDB info PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak Resolution 2.05 Å

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		44	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		A	W	K	L	C	A	L	Y	P	S	L	.	.	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	F	P	D	L	Q	K	Q
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		K	L	K	V	G	F	I	Y	I	G	P	P	G	D	F	G	W	T	Y	Q	H	D	Q	A	R	K	E	L	V	E	A	L	G	D	K	V	E	T	T	F	L	E	N	V	A	E	G	A	D	A	E	R	S	I	K	R	I	A	R	A	G	N	K	L	I	F	T	T	S	F	G	Y	M	D	P	T	V	K	V	A
Template Known Secondary structure										S	S		G	G	G	S	S																	T	T	T								S			T	T													T	T		S						S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		122	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.
Predicted Secondary structure				.	.																																																																										.	.
Query SS confidence				.	.																																																																										.	.
Query Sequence		V	A	.	.	S	L	P	V	I	E	L	V	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S	P	.	.	V
Query Conservation				.	.																																																																										.	.
Alig confidence				.	.																					.																						.	.													.																	.	.
Template Conservation																										.																						.	.													.
Template Sequence		K	K	F	P	D	V	K	F	E	H	A	T	G	Y	K	T	A	D	N	M	S	A	Y	N	.	A	R	F	Y	E	G	R	Y	V	Q	G	V	I	A	A	K	M	S	K	K	G	.	.	I	A	G	Y	I	G	S	V	P	V	P	E	.	V	V	Q	G	I	N	S	F	M	L	G	A	Q	S	V	N	P	D	F
Template Known Secondary structure		T	T		T	T	S						S					B	T	T						.																			S	S		.	.													.														T	T		T	T
Template Predicted Secondary structure																										.																						.	.													.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		R	I	V	D	I	A	L	G	D	N	.	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	G	R	N	L	K	T	P	L	T	V	V	S	F	Y	L	S	H	Q	V	Y	R	G	L	K	R	G	R	V	I	M	A	A	S	D
Query Conservation												.
Alig confidence												.																			.	.																			.	.	.												.	.	.
Template Conservation																															.	.																			.	.	.												.	.	.
Template Sequence		R	V	K	V	I	W	V	N	S	W	F	D	P	G	K	E	A	D	A	A	K	A	L	I	D	Q	G	V	D	.	.	I	I	T	Q	H	T	D	S	T	A	A	I	Q	V	A	H	D	R	.	.	.	G	I	K	A	F	G	Q	A	S	D	M	.	.	.	I	K	F	A	P	D	T	Q	L	T	A	V	V	D
Template Known Secondary structure									S	S	S																T	T		S	.	.					S	S	S	S	S									T	.	.	.	T								S			.	.	.	G	G	G	S	T	T	T
Template Predicted Secondary structure																															.	.																			.	.	.												.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	V	W	Q	G	E	L	A	V	E	Q	A	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	W	G	P	Y	Y	I	D	R	A	K	A	V	L	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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