Job Description P38683 Confidence 97.32% Date Thu Jan 5 11:58:14 GMT 2012 Rank 93 Aligned Residues 199 % Identity 11% Template c3q41B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) Resolution 3.40 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.					.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.								.	110
Predicted Secondary structure																																		.	.	.	.																																				.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.																																				.	.	.	.	.	.	.
Query Sequence		K	R	A	W	K	L	C	A	L	Y	P	S	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	.	.	.	.	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	.	.	.	.	.	.	.	G	S
Query Conservation																																		.	.	.	.																																				.	.	.	.	.	.	.
Alig confidence													.	.																				.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation													.	.
Template Sequence		P	K	I	V	N	I	G	A	V	L	S	.	.	T	R	K	H	E	Q	M	F	R	E	A	V	N	Q	A	N	K	R	H	G	S	W	K	I	Q	L	N	A	T	S	V	T	H	K	P	N	A	I	Q	M	A	L	S	V	C	E	D	L	I	S	S	Q	V	Y	A	I	L	V	S	H	P	P	T	P	N	D	H
Template Known Secondary structure												S	.	.	S																				S	S	S												S	S											T	T	G	G	G											S		T	T	T	T
Template Predicted Secondary structure													.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.
Query Sequence		S	T	T	S	F	P	D	L	Q	K	Q	V	A	S	L	P	V	I	E	L	V	.	.	.	.	.	.	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M
Query Conservation																							.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																																			.	.	.					.	.
Template Conservation																																																															.	.	.					.	.
Template Sequence		F	T	P	T	P	V	S	Y	T	A	G	F	Y	R	I	P	V	L	G	L	T	T	R	M	S	I	Y	S	D	K	S	I	H	L	S	F	L	R	T	V	P	P	Y	S	H	Q	S	S	V	W	F	E	M	M	R	V	Y	N	W	N	H	.	.	.	I	I	L	L	.	.	V	S	D	D	H	E	G	R	A	A
Template Known Secondary structure		T	T										T	T	T							S				G	G	G	G	S	S	S	S		T	T				S	S			G	G	G												B					.	.	.					.	.			S	S
Template Predicted Secondary structure																																																															.	.	.					.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.			.	.	.	170	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	G	F	R	A	A	I	A	G	S	P	V	R	I	V	D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	G	R	N	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	R	L	E	T	L	L	E	E	R	E	S	K	A	E	K	V	L	Q	F	D	P	G	T	K	N	V	T	A	L	L	M	E	A	R	E	L	E	A	R	V	I	I	L	S	A	S	E	D	D	A	A	T	V	Y	R	A	A	A	M	L	N
Template Known Secondary structure										T	T	S	S											T	T		S											T	S	S																						T	T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions