Job Description P38683 Confidence 98.11% Date Thu Jan 5 11:58:14 GMT 2012 Rank 88 Aligned Residues 197 % Identity 11% Template c3n0xA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:possible substrate binding protein of abc transporter PDBTitle: crystal structure of an abc-type branched-chain amino acid transporter2 (rpa4397) from rhodopseudomonas palustris cga009 at 1.50 a resolution Resolution 1.50 Å

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		45	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.									.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.			.	.	110	.
Predicted Secondary structure														.	.																		.	.	.	.	.	.	.	.																													.							.	.
Query SS confidence														.	.																		.	.	.	.	.	.	.	.																													.							.	.
Query Sequence		W	K	L	C	A	L	Y	P	S	L	K	D	.	.	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	.	.	.	.	.	.	.	.	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	.	G	A	E	A	I	L	.	.	L	G	S	S
Query Conservation														.	.																		.	.	.	.	.	.	.	.																													.							.	.
Alig confidence														.	.																		.	.	.	.	.	.	.	.																													.							.	.
Template Conservation
Template Sequence		L	K	I	A	L	I	Y	G	K	T	G	P	L	E	A	Y	A	K	Q	T	E	T	G	L	X	X	G	L	E	Y	A	T	K	G	T	X	T	L	D	G	R	K	I	V	V	I	T	K	D	D	Q	S	K	P	D	L	S	K	A	A	L	A	E	A	Y	Q	D	D	G	A	D	I	A	I	G	T	S	S	S	A
Template Known Secondary structure											S	S	T	T																			T	T	T					T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.							.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence		T	T	S	F	P	D	L	Q	K	Q	V	A	S	L	P	V	I	E	L	V	N	A	I	.	.	.	.	.	.	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V
Query Conservation																									.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																									.	.	.	.												.	.
Template Conservation																																																							.	.	.	.												.	.
Template Sequence		A	A	L	A	D	L	P	V	A	E	E	N	K	K	I	L	I	V	E	P	A	V	A	D	Q	I	T	G	E	K	W	N	R	Y	I	F	R	T	G	R	N	S	S	Q	D	A	I	S	N	A	V	A	I	.	.	.	.	G	K	Q	G	V	T	I	A	T	L	A	.	.	Q	D	Y	A	F	G	R	D	G	V
Template Known Secondary structure														T							S				G	G	G	G	T	T	T			T	T					S															.	.	.	.			T	T								.	.		S	S
Template Predicted Secondary structure																																																							.	.	.	.												.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		E	G	F	R	A	A	I	A	G	S	P	V	R	I	V	D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	.	.	.	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	G	R	N	L	K
Query Conservation																																										.	.	.
Alig confidence																																										.	.	.
Template Conservation
Template Sequence		A	A	F	K	E	A	L	A	K	T	G	A	T	L	A	T	E	E	Y	V	P	T	T	T	T	D	F	T	A	V	G	Q	R	L	F	D	A	L	K	D	K	P	G	K	K	I	I	W	V	I	W	A	G	G	G	D	P	L	T	K	L	Q	D	X	D
Template Known Secondary structure									T	T	T	T											T	T																T	T		S	S										S	S	S									T
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions