Job Description P38683 Confidence 98.43% Date Thu Jan 5 11:58:14 GMT 2012 Rank 82 Aligned Residues 249 % Identity 12% Template c3n0wA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc branched chain amino acid family transporter, PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution Resolution 1.88 Å

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		44	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.						.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure											.	.	.																					.	.	.	.	.																														.
Query SS confidence											.	.	.																					.	.	.	.	.																														.
Query Sequence		A	W	K	L	C	A	L	Y	P	.	.	.	S	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	.	.	.	.	.	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	.	G	A	E	A	I	L	L	G	S	S	T	T	S
Query Conservation											.	.	.																					.	.	.	.	.																														.
Alig confidence											.	.	.																					.	.	.	.	.																														.
Template Conservation
Template Sequence		Q	V	T	L	G	V	L	T	D	X	S	S	V	Y	A	D	S	A	G	K	G	S	V	A	A	V	Q	L	A	I	E	D	V	G	G	K	A	L	G	Q	P	V	K	L	V	S	A	D	Y	Q	X	K	T	D	V	A	L	S	I	A	R	E	W	F	D	R	D	G	V	D	A	I	F	D	V	V	N	S	G	T
Template Known Secondary structure											S	S	S	T	T	T	T	T	S															T	T	T			T	T											T	T																S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.									140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.
Query Sequence		F	P	D	L	Q	K	Q	V	A	S	L	P	V	I	E	L	V	N	A	I	D	A	P	Q	V	.	.	.	.	.	.	.	.	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E
Query Conservation																											.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.																											.	.	.					.	.
Template Conservation																																																													.	.	.					.	.
Template Sequence		A	L	A	I	N	N	L	V	K	D	K	K	K	L	A	F	I	T	A	A	A	A	D	Q	I	G	G	T	E	C	N	G	Y	G	I	G	F	L	Y	N	F	T	S	I	V	K	T	V	V	Q	A	Q	L	A	K	G	Y	K	T	.	.	.	W	F	L	X	.	.	L	P	D	A	A	Y	G	D	L	X	N	A
Template Known Secondary structure													T							S				T	T	T	T	T	T	T			S	S					S																	T	T				.	.	.					.	.			S	S
Template Predicted Secondary structure																																																													.	.	.					.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.																	.	.	.	.
Query SS confidence																																																										.	.	.	.																	.	.	.	.
Query Sequence		G	F	R	A	A	I	A	G	S	P	V	R	I	V	D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	.	.	.	.	G	R	N	L	K	T	P	L	T	V	V	S	F	Y	L	S	.	.	.	.
Query Conservation																																																										.	.	.	.																	.	.	.	.
Alig confidence																																									.	.																.	.	.	.																	.	.	.	.
Template Conservation																																									.	.
Template Sequence		A	I	R	R	E	L	T	A	G	G	G	Q	I	V	G	S	V	R	F	P	F	E	T	Q	D	F	S	S	Y	L	L	Q	A	K	A	S	G	A	Q	.	.	L	I	V	S	T	S	G	G	A	A	N	I	N	I	X	K	Q	A	R	E	F	G	L	P	S	K	T	Q	K	V	G	G	X	I	D	I	L	T	D
Template Known Secondary structure											T											T	T															T		S	.	.																					T	T		S		S	S							B
Template Predicted Secondary structure																																									.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
			259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	H	Q	V	Y	R	G	L	K	R	G	R	V	I	M	A	A	S	D	Q	M	V	W	Q	G	E	L	A	V	E	Q	A	I	R	Q	L	Q	G	Q	S	V	S
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		V	K	S	A	G	L	R	V	X	Q	G	Q	E	Y	A	T	S	F	Y	W	N	X	D	D	R	T	R	A	F	A	K	R	F	Y	A	K	X	G	K	X	P	T
Template Known Secondary structure											T	T						S			T	T	S	S															S	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions