Job Description P38683 Confidence 100.00% Date Thu Jan 5 11:58:14 GMT 2012 Rank 27 Aligned Residues 265 % Identity 13% Template c3mizB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli Resolution 1.91 Å

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		44	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		A	W	K	L	C	A	L	Y	P	S	.	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	F	P	D	L	Q	K	Q	V
Query Conservation												.
Alig confidence												.																																	.	.
Template Conservation																																													.	.
Template Sequence		S	N	T	F	G	I	I	T	D	Y	V	S	T	T	P	Y	S	V	D	I	V	R	G	I	Q	D	W	A	N	A	N	G	K	T	I	L	I	A	N	T	G	G	S	.	.	S	E	R	E	V	E	I	W	K	X	F	Q	S	H	R	I	D	G	V	L	Y	V	T	X	Y	R	R	I	V	D	P	E	S	G	D
Template Known Secondary structure												S	S	S		S	S	S														T	T									T	T		.	.														T	T																			T	T
Template Predicted Secondary structure																																													.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	L	P	V	I	E	L	V	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S	P	V	R	I	V	D	I
Query Conservation
Alig confidence																																													.	.	.
Template Conservation																																													.	.	.
Template Sequence		V	S	I	P	T	V	X	I	N	C	R	P	Q	T	R	E	L	L	P	S	I	E	P	D	D	Y	Q	G	A	R	D	L	T	R	Y	L	L	E	R	G	H	R	R	.	.	.	I	G	Y	I	R	L	N	P	I	L	L	G	A	E	L	R	L	D	A	F	R	R	T	T	S	E	F	G	L	T	E	N	D	L
Template Known Secondary structure														S	S	T	T	S	S																					T	T			S	.	.	.								T	T																		T	T			G	G	G
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		203	.	.								.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure					.	.	.	.	.	.	.																																								.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.																																								.	.	.	.	.
Query Sequence		A	L	G	.	.	.	.	.	.	.	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	G	R	.	.	.	.	.	N	L	K	T	P	L	T	V	V	S	F	Y	L	S	H	Q	V	Y	R	G	L	K	R	G	R	V
Query Conservation					.	.	.	.	.	.	.																																								.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.																																								.	.	.	.	.																									.	.
Template Conservation																																																																																.	.
Template Sequence		S	I	S	L	G	X	D	G	P	V	G	A	E	N	N	Y	V	F	A	A	A	T	E	X	L	K	Q	D	D	R	P	T	A	I	X	S	G	N	D	E	X	A	I	Q	I	Y	I	A	A	X	A	L	G	L	R	I	P	Q	D	V	S	I	V	G	F	D	D	F	R	T	V	T	X	A	L	K	P	E	.	.
Template Known Secondary structure									S	S	T	T	S															S	T	T			S					S	S														T	T			T	T	T	T						S	B							T	T	S	S	S		.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		I	M	A	A	S	D	Q	M	V	W	Q	G	E	L	A	V	E	Q	A	I	R	Q	L	Q	G	Q	S	V	.	S	D	N	V	S	P	P	I	L	V	L	T	P	K	N	A	D
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		L	T	T	A	A	L	P	Y	Y	D	L	G	R	E	G	A	K	W	L	N	D	L	I	A	G	E	K	I	Y	P	G	S	R	V	V	S	C	K	L	V	E	R	S	S	A	A
Template Known Secondary structure			B																							S					S	S												S	S
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions