Job Description P38683 Confidence 98.77% Date Thu Jan 5 11:58:14 GMT 2012 Rank 74 Aligned Residues 213 % Identity 13% Template c3lkbB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:probable branched-chain amino acid abc PDBTitle: crystal structure of a branched chain amino acid abc2 transporter from thermus thermophilus with bound valine Resolution 2.40 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.								.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																		.	.																	.	.	.	.	.	.	.
Query SS confidence																		.	.																	.	.	.	.	.	.	.
Query Sequence		A	K	R	A	W	K	L	C	A	L	Y	P	S	L	K	D	.	.	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	.	.	.	.	.	.	.	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S
Query Conservation																		.	.																	.	.	.	.	.	.	.
Alig confidence																		.	.																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Q	Q	Q	V	T	L	F	W	S	G	A	I	T	G	P	T	S	D	A	G	A	P	Y	G	A	A	V	E	D	Y	C	K	W	A	N	E	R	K	L	V	P	G	V	V	F	N	C	V	V	R	D	D	Q	Y	N	N	A	N	T	Q	R	F	F	E	E	A	V	D	R	F	K	I	P	V	F	L	S	Y	A
Template Known Secondary structure														S	S	S	T	T																						T	S	S	T	T											T	T																			S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		112	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.						.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure						.	.																				.	.	.	.	.
Query SS confidence						.	.																				.	.	.	.	.
Query Sequence		T	T	S	F	.	.	P	D	L	Q	K	Q	V	A	S	L	P	V	I	E	L	V	N	A	I	.	.	.	.	.	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M
Query Conservation						.	.																				.	.	.	.	.
Alig confidence						.	.																				.	.	.	.	.																																					.	.	.	.
Template Conservation																																																																				.	.	.	.
Template Sequence		T	G	A	N	L	Q	L	K	P	L	I	Q	E	L	R	I	P	T	I	P	A	S	M	H	I	E	L	I	D	P	P	N	N	D	Y	I	F	L	P	T	T	S	Y	S	E	Q	V	V	A	L	L	E	Y	I	A	R	E	K	K	G	A	K	V	A	L	V	.	.	.	.	V	H	P	S	P	F	G	R	A	P
Template Known Secondary structure																T						S				G	G	G	T	S	S	S	S		T	T	B																						S	T	T							.	.	.	.			S	S					T	T
Template Predicted Secondary structure																																																																				.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	G	F	R	A	A	I	A	G	S	P	V	R	I	V	D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	G	R	N	L	K	T	P	L	T	V	V	S	F	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	D	A	R	K	A	A	R	E	L	G	L	Q	I	V	D	V	Q	E	V	G	S	G	N	L	D	N	T	A	L	L	K	R	F	E	Q	A	G	V	E	Y	V	V	H	Q	N	V	A	G	P	V	A	N	I	L	K	D	A	K	R	L	G	L	K	M	R	H	L	G	A	H	Y
Template Known Secondary structure													T											T	T														T	T								S															T	T									G	G
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions