Job Description P38683 Confidence 99.97% Date Thu Jan 5 11:58:14 GMT 2012 Rank 44 Aligned Residues 252 % Identity 13% Template c3jy6B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis Resolution 1.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	L	C	A	L	Y	P	S	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	F	P	D	L	Q	K	Q	V	A	S
Query Conservation
Alig confidence																																											.	.
Template Conservation																																											.	.
Template Sequence		K	L	I	A	V	I	V	A	N	I	D	D	Y	F	S	T	E	L	F	K	G	I	S	S	I	L	E	S	R	G	Y	I	G	V	L	F	D	A	N	A	D	.	.	I	E	R	E	K	T	L	L	R	A	I	G	S	R	G	F	D	G	L	I	L	Q	S	F	S	N	P	Q	T	V	Q	E	I	L	H	Q	Q
Template Known Secondary structure									S		T	T	S															G	G	G	T									T	T		.	.														T	T		S						S	S	S										T	T	S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	V	I	E	L	V	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S	P	V	R	I	V	D	I	A	L
Query Conservation
Alig confidence																	.																										.	.	.																																		.
Template Conservation																	.																										.	.	.																																		.
Template Sequence		M	P	V	V	S	V	D	R	E	M	D	A	C	P	W	.	P	Q	V	V	T	D	N	F	E	A	A	K	A	A	T	T	A	F	R	Q	Q	G	Y	Q	H	.	.	.	V	V	V	L	T	S	E	L	E	L	S	R	T	R	Q	E	R	Y	R	G	I	L	A	A	A	Q	D	V	D	V	L	E	V	.	S	E
Template Known Secondary structure		S						S				S	S		S	S	.																				T	T	T				.	.	.								G	G	G													T	T		S								.		T
Template Predicted Secondary structure																	.																										.	.	.																																		.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.						.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.
Query SS confidence																																			.	.	.	.	.
Query Sequence		G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	.	.	.	.	.	A	A	M	G	E	G	R	N	L	K	T	P	L	T	V	V	S	F	Y	L	S	H	Q	V	Y	R	G	L	K	R	G	R	V	I	M	A	A	S	D	Q	M	V
Query Conservation																																			.	.	.	.	.
Alig confidence																																			.	.	.	.	.																											.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		S	S	Y	N	H	S	E	V	H	Q	R	L	T	Q	L	I	T	Q	N	D	Q	K	T	V	A	F	A	L	K	E	R	W	L	L	E	F	F	P	N	L	I	I	S	G	L	I	D	N	Q	T	V	T	A	T	G	F	A	D	T	D	F	I	R	R	.	.	.	.	.	M	K	L	T	L	I	T	Q	N	P	F
Template Known Secondary structure		T	S																S	S		S							S	S															T	S			S	S	S						B				T	T	T	T	T	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.						.	.	.	.	.	290	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		W	Q	G	E	L	A	V	E	Q	A	I	R	Q	L	Q	G	Q	S	V	.	S	D	N	V	S	P	P	I	L	V
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		L	M	G	A	S	S	A	E	I	M	L	R	Q	L	A	G	E	K	V	A	P	E	K	M	V	I	P	A	K	L
Template Known Secondary structure																T	T
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions