Job Description P38683 Confidence 98.35% Date Thu Jan 5 11:58:14 GMT 2012 Rank 85 Aligned Residues 217 % Identity 12% Template c3i45A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of putative twin-arginine translocation pathway2 signal protein from rhodospirillum rubrum atcc 11170 Resolution 1.36 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.									.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.			.
Predicted Secondary structure																	.																			.	.	.	.	.	.	.	.																													.							.	.
Query SS confidence																	.																			.	.	.	.	.	.	.	.																													.							.	.
Query Sequence		A	K	R	A	W	K	L	C	A	L	Y	P	S	L	K	.	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	.	.	.	.	.	.	.	.	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	.	G	A	E	A	I	L	.	.	L
Query Conservation																	.																			.	.	.	.	.	.	.	.																													.							.	.
Alig confidence																	.																			.	.	.	.	.	.	.	.																													.							.	.
Template Conservation
Template Sequence		S	L	E	A	I	R	I	G	E	I	N	S	Y	S	Q	I	P	A	F	T	L	P	Y	R	N	G	W	Q	L	A	V	E	Q	I	N	A	A	G	G	L	L	G	G	R	P	L	E	V	I	S	R	D	D	G	G	D	P	G	K	A	V	T	A	A	Q	E	L	L	T	R	H	G	V	H	A	L	A	G	T	F
Template Known Secondary structure														T	T	T																						T	T		B	T	T	T	B										T	T																			S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.							.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		G	S	S	T	T	S	F	P	D	L	Q	K	Q	V	A	S	L	P	V	I	E	L	V	N	A	I	.	.	.	.	.	.	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K
Query Conservation																												.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.																																					.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.
Template Sequence		L	S	H	V	G	L	A	V	S	D	F	A	R	Q	R	K	V	L	F	M	A	S	E	P	L	T	D	A	L	T	W	E	K	G	N	R	Y	T	Y	R	L	R	P	S	T	Y	M	Q	A	A	M	L	A	A	E	A	A	K	L	P	I	T	R	W	A	T	I	A	.	.	.	.	.	P	N	Y	E	Y	G	Q
Template Known Secondary structure		S															T							S				G	G	G	T	T	T	T			T	T					S															T	T	S	S									.	.	.	.	.		S	S
Template Predicted Secondary structure																																																																						.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.																																												.	.
Query SS confidence																			.	.																																												.	.
Query Sequence		E	M	V	E	G	F	R	A	A	I	A	G	S	P	V	R	I	.	.	V	D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	.	.	G	R	N	L	K	T	P	L	T	V	V	S	F	Y	L	S
Query Conservation																			.	.																																												.	.
Alig confidence																			.	.																																												.	.
Template Conservation
Template Sequence		S	A	V	A	R	F	K	E	L	L	L	A	A	R	P	E	V	T	F	V	A	E	Q	W	P	A	L	Y	K	L	D	A	G	P	T	V	Q	A	L	Q	Q	A	E	P	E	G	L	F	N	V	L	F	G	A	D	L	P	K	F	V	R	E	G	R	V	R	G	L	F	A	G	R	Q	V	V	S	M	L	T	G
Template Known Secondary structure																T	T											T	T														T			S								T	T													T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		259	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	V	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	E	Y
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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