Job Description P38683 Confidence 98.63% Date Thu Jan 5 11:58:14 GMT 2012 Rank 79 Aligned Residues 254 % Identity 10% Template c3i09A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution Resolution 1.80 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																		.	.			.																.	.	.	.	.
Query SS confidence																		.	.			.																.	.	.	.	.
Query Sequence		A	K	R	A	W	K	L	C	A	L	Y	P	S	L	K	D	.	.	S	Y	.	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	.	.	.	.	.	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T
Query Conservation																		.	.			.																.	.	.	.	.
Alig confidence																		.	.			.																.	.	.	.	.
Template Conservation
Template Sequence		G	A	D	S	V	K	I	G	F	I	T	D	X	S	G	L	Y	A	D	I	D	G	Q	G	G	L	E	A	I	K	X	A	V	A	D	F	G	G	K	V	N	G	K	P	I	E	V	V	Y	A	D	H	Q	N	K	A	D	I	A	A	S	K	A	R	E	W	X	D	R	G	G	L	D	L	L	V	G	G	T	N
Template Known Secondary structure				S	S									S	S	S	T	T	T	T	T	S																T	S			T	T											T	T																S									S
Template Predicted Secondary structure
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.										.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.
Query Sequence		T	S	F	P	D	L	Q	K	Q	V	A	S	L	P	V	I	E	L	V	.	.	.	.	.	.	.	.	.	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E
Query Conservation																					.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.																																			.	.	.					.	.
Template Conservation																																																																.	.	.					.	.
Template Sequence		S	A	T	A	L	S	X	N	Q	V	A	A	E	K	K	K	V	Y	I	N	I	G	A	G	A	D	T	L	T	N	E	Q	C	T	P	Y	T	V	H	Y	A	Y	D	T	X	A	L	A	K	G	T	G	S	A	V	V	K	Q	G	G	K	T	.	.	.	W	F	F	L	.	.	T	A	D	Y	A	F	G	K	A
Template Known Secondary structure																T							S				G	G	G	G	T	T	T			T	T					S																	T	T				.	.	.					.	.			S	S
Template Predicted Secondary structure																																																																.	.	.					.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.			170	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		M	V	E	G	F	R	A	A	I	A	G	S	P	V	R	I	V	D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	.	.	G	R	N	L	K	T	P	L	T	V	V	S	F	Y	L	S	H	Q	V
Query Conservation																																																													.	.
Alig confidence																																																													.	.
Template Conservation
Template Sequence		L	E	K	N	T	A	D	V	V	K	A	N	G	G	K	V	L	G	E	V	R	H	P	L	S	A	S	D	F	S	S	F	L	L	Q	A	Q	S	S	K	A	Q	I	L	G	L	A	N	A	G	G	D	T	V	N	A	I	K	A	A	K	E	F	G	I	T	K	T	X	K	L	A	A	L	L	X	F	I	N	D
Template Known Secondary structure													T	T											T	T		S												T			S																					T	T	G	G	G	T						S	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		262	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		Y	R	G	L	.	.	.	.	K	R	G	R	V	I	M	A	A	S	D	Q	M	V	W	Q	G	E	L	A	V	E	Q	A	I	R	Q	L	Q	G	Q	S	V	S
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.
Template Conservation
Template Sequence		V	H	A	L	G	L	E	T	T	Q	G	L	V	L	T	D	S	W	Y	W	N	R	D	Q	A	S	R	Q	W	A	Q	R	Y	F	A	K	X	K	K	X	P	S
Template Known Secondary structure											T	T						S			T	T	S	S															S	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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