Job Description P38683 Confidence 100.00% Date Thu Jan 5 11:58:14 GMT 2012 Rank 39 Aligned Residues 267 % Identity 13% Template c3hcwB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus Resolution 2.20 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		A	K	R	A	W	K	L	C	A	L	Y	P	S	.	.	.	.	.	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	F
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.																												.	.
Template Conservation																																															.	.
Template Sequence		T	N	Q	T	Y	K	I	G	L	V	L	K	G	S	E	E	P	I	R	L	N	P	F	Y	I	N	V	L	L	G	I	S	E	T	C	N	Q	H	G	Y	G	T	Q	T	T	.	.	V	S	N	N	M	N	D	L	M	D	E	V	Y	K	M	I	K	Q	R	M	V	D	A	F	I	L	L	Y	S	K	E	N	D
Template Known Secondary structure													S			S					T																		T	T							.	.				S														T	T			S					S				T	T
Template Predicted Secondary structure																																															.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		116	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure							.																			.
Query SS confidence							.																			.
Query Sequence		P	D	L	Q	K	.	Q	V	A	S	L	P	V	I	E	L	V	N	A	I	D	A	P	Q	.	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A
Query Conservation							.																			.
Alig confidence							.																			.																												.	.	.
Template Conservation																																																						.	.	.
Template Sequence		P	I	K	Q	M	L	I	D	E	S	M	P	F	I	V	I	G	K	P	T	S	D	I	D	H	Q	F	T	H	I	D	N	D	N	I	L	A	S	E	N	L	T	R	H	V	I	E	Q	G	V	D	E	.	.	.	L	I	F	I	T	E	K	G	N	F	E	V	S	K	D	R	I	Q	G	F	E	T	V	A	S
Template Known Secondary structure										T	T							S				S	S	G	G	G	S	S																					T			S		.	.	.							S	S
Template Predicted Secondary structure																																																						.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		194	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.						.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure					.	.																																											.	.	.	.	.
Query SS confidence					.	.																																											.	.	.	.	.
Query Sequence		G	S	P	.	.	V	R	I	V	D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	.	.	.	.	.	A	M	G	E	G	R	N	L	K	T	P	L	T	V	V	S	F	Y	L	S	H	Q	V	Y	R	G	L	K
Query Conservation					.	.																																											.	.	.	.	.
Alig confidence					.	.																																											.	.	.	.	.																									.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		Q	F	N	L	D	Y	Q	I	I	E	T	S	N	E	R	E	V	I	L	N	Y	M	Q	N	L	H	T	R	L	K	D	P	N	I	K	Q	A	I	I	S	L	D	A	M	L	H	L	A	I	L	S	V	L	Y	E	L	N	I	E	I	P	K	D	V	M	T	A	T	F	N	D	S	Y	L	T	E	.	.	.	I
Template Known Secondary structure			T	T										S																			S	S	S							S	S														T	T			T	T	T	T							S		S					.	.	.	T
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	R	V	I	M	A	A	S	D	Q	M	V	W	Q	G	E	L	A	V	E	Q	A	I	R	Q	L	Q	G	Q	S	V	S	D	N	V	S	P	P	I	L	V	L	T	P	K	N	A	D	R
Query Conservation
Alig confidence																																			.
Template Conservation																																			.
Template Sequence		A	S	P	P	Q	T	C	I	D	I	K	P	R	M	L	G	Q	Q	A	G	S	A	I	L	N	I	L	K	N	D	V	I	E	.	L	V	I	I	D	T	E	L	K	I	R	K	S	T	Q	R
Template Known Secondary structure		S	S	S																															.												G	G	G
Template Predicted Secondary structure																																			.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions