Job Description P38683 Confidence 100.00% Date Thu Jan 5 11:58:14 GMT 2012 Rank 4 Aligned Residues 283 % Identity 20% Template c3h75A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens Resolution 1.60 Å

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		46	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120
Predicted Secondary structure									.																																																															.	.	.	.
Query SS confidence									.																																																															.	.	.	.
Query Sequence		K	L	C	A	L	Y	P	.	S	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	.	.	.	.	F	P	D	L	Q	K
Query Conservation									.																																																															.	.	.	.
Alig confidence									.																																		.	.																												.	.	.	.
Template Conservation																																											.	.
Template Sequence		S	V	V	F	L	N	P	G	N	S	T	E	T	F	W	V	S	Y	S	Q	F	X	Q	A	A	A	R	D	L	G	L	D	L	R	I	L	Y	A	E	R	D	.	.	P	Q	N	T	L	Q	Q	A	R	E	L	F	Q	G	R	D	K	P	D	Y	L	X	L	V	N	E	Q	Y	V	A	P	Q	I	L	R	L	S
Template Known Secondary structure									S		T	T																			T									T	T		.	.														S	S	S			S								S	S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																					.																													.	.	.	.
Query SS confidence																					.																													.	.	.	.
Query Sequence		Q	V	A	S	L	P	V	I	E	L	V	N	A	I	D	A	P	Q	V	.	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	.	.	.	.	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S
Query Conservation																					.																													.	.	.	.
Alig confidence																					.																													.	.	.	.
Template Conservation
Template Sequence		Q	G	S	G	I	K	L	F	I	V	N	S	P	L	T	L	D	Q	R	W	I	G	S	X	V	G	D	D	E	E	A	G	Y	R	X	L	K	E	L	L	H	K	L	G	P	V	P	A	G	H	G	I	E	L	L	A	F	S	G	L	K	V	T	P	A	A	Q	L	R	E	R	G	L	R	R	A	L	A	E	H
Template Known Secondary structure		T	T	S									S				T	T	T																														S	S										S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		196		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.								.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure			.																																																			.	.	.	.	.	.	.
Query SS confidence			.																																																			.	.	.	.	.	.	.
Query Sequence		P	.	V	R	I	V	D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	G	R	N	L	.	.	.	.	.	.	.	K	T	P	L	T	V	V	S	F	Y	L	S	H	Q	V	Y	R	G	L	K	R
Query Conservation			.																																																			.	.	.	.	.	.	.
Alig confidence			.																																			.	.															.	.	.	.	.	.	.
Template Conservation																																						.	.
Template Sequence		P	Q	V	H	L	R	Q	L	V	Y	G	E	W	N	R	E	R	A	Y	R	Q	A	Q	Q	L	L	K	R	Y	P	K	T	Q	L	V	W	.	.	S	A	N	D	E	X	A	L	G	A	X	Q	A	A	R	E	L	G	R	K	P	G	T	D	L	L	F	S	G	V	N	S	S	P	E	A	L	Q	A	L	I	D
Template Known Secondary structure		T	T										T	T																	T	T						.	.		S	S														T	T			B	T	T	T	B						S
Template Predicted Secondary structure																																						.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.															.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	R	V	I	M	A	A	S	D	Q	M	V	W	Q	G	E	L	A	V	E	Q	A	I	R	Q	L	Q	G	Q	S	.	.	.	.	.	V	S	D	N	V	S	P	P	I	L	V	L	T	P	K	N	A	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	I	R	R	S	L	S	P	G	G	F
Query Conservation																																.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																					.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		G	K	L	S	V	L	E	A	G	.	H	F	T	L	G	G	W	A	L	V	A	L	H	D	D	A	L	G	L	D	A	R	R	L	G	G	P	D	W	Q	L	S	L	F	Q	A	L	T	P	A	Q	A	R	Q	L	L	R	L	G	D	Q	V	G	T	R	V	D	F	R	G	L	S	A	Q	G	K	P	D	S	Y
Template Known Secondary structure		T	S	S							.	G	G	G														T	T			S	T	T	T	T		S																						G	G	G	G	G	G	G							S		T	T			T	T
Template Predicted Secondary structure											.
Template SS confidence
		289	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		329	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	V	Y	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y	P	F	G
Template Known Secondary structure						S
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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