Job Description P38683 Confidence 98.50% Date Thu Jan 5 11:58:14 GMT 2012 Rank 81 Aligned Residues 218 % Identity 12% Template c3h5lB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi Resolution 1.70 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.								.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.		.	.	.	.	.
Predicted Secondary structure																					.	.																	.	.	.	.	.	.	.																					.										.
Query SS confidence																					.	.																	.	.	.	.	.	.	.																					.										.
Query Sequence		P	L	K	A	K	R	A	W	K	L	C	A	L	Y	P	S	L	K	D	.	.	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	.	.	.	.	.	.	.	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	.	A	Q	I	D	Q	C	K	Q	W	.	G	A	E	A	I
Query Conservation																					.	.																	.	.	.	.	.	.	.																					.										.
Alig confidence																					.	.																	.	.	.	.	.	.	.																					.										.
Template Conservation
Template Sequence		Q	A	Q	S	S	D	P	V	V	I	G	C	P	A	P	L	T	G	I	V	A	A	D	G	I	E	F	Q	R	G	I	Q	M	A	A	D	E	I	N	A	V	G	G	I	L	G	R	P	I	E	L	V	F	A	D	T	Q	S	K	G	V	D	V	V	I	Q	S	A	Q	R	L	I	D	R	D	N	A	S	A	L
Template Known Secondary structure						S	S											S	S	T	T																					T	T	T	B	T	T	B										T	T																T	T			S
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		107			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.											.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.
Predicted Secondary structure			.	.																											.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Query SS confidence			.	.																											.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Query Sequence		L	.	.	L	G	S	S	T	T	S	F	P	D	L	Q	K	Q	V	A	S	L	P	V	I	E	L	V	N	A	.	.	.	.	.	.	.	.	.	.	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	.	.	.	.	.	H	G	K	P	L	N	V
Query Conservation			.	.																											.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Alig confidence			.	.																											.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation
Template Sequence		I	A	G	Y	N	L	E	N	G	T	A	L	H	D	V	A	A	D	A	G	V	I	A	M	H	A	N	T	V	A	V	H	D	E	M	V	K	S	D	P	D	R	Y	W	G	T	F	Q	Y	D	P	P	E	T	L	Y	G	G	G	F	L	K	F	L	K	D	I	E	D	N	G	E	F	S	R	P	N	N	K	I
Template Known Secondary structure				S			S	S		S											T																				T	T	T		T	T				S	S			T																	T	T	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S	P	V	R	I	V	D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	.	A	M	G	E	G	R	N	L	K	T
Query Conservation																																																																							.
Alig confidence					.	.																																																																	.
Template Conservation					.	.
Template Sequence		A	I	I	.	.	T	G	P	G	I	Y	S	V	N	I	A	N	A	I	R	D	G	A	G	E	Y	G	Y	D	V	S	L	F	E	T	V	A	I	P	V	S	D	W	G	P	T	L	A	K	L	R	A	D	P	P	A	V	I	V	V	T	H	F	Y	P	Q	D	Q	A	L	F	M	N	Q	F	M	T	D	P	T
Template Known Secondary structure					.	.			S	S														G	G	G	G	T											S	S		S												S			S																				T	T	S
Template Predicted Secondary structure					.	.
Template SS confidence
		196	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		249	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	T	V	V	S	F	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	L	V	Y	L	Q	Y	G
Template Known Secondary structure		S							S	G
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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