Job Description P38683 Confidence 99.90% Date Thu Jan 5 11:58:14 GMT 2012 Rank 69 Aligned Residues 227 % Identity 13% Template c3e61A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon; PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus Resolution 2.00 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	A	L	Y	P	S	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	F	P	D	L	Q	K	Q	V	A	S	L	P
Query Conservation
Alig confidence																																									.	.																																				.
Template Conservation																																									.	.																																				.
Template Sequence		I	G	L	L	L	P	D	M	S	N	P	F	F	T	L	I	A	R	G	V	E	D	V	A	L	A	H	G	Y	Q	V	L	I	G	N	S	D	N	D	.	.	I	K	K	A	Q	G	Y	L	A	T	F	V	S	H	N	C	T	G	M	I	S	T	A	F	N	E	N	I	I	E	N	T	L	T	D	.	H	I	P
Template Known Secondary structure							S		T	T	S																	T	T									T	T		.	.														T	T		S						G	G	G											.
Template Predicted Secondary structure																																									.	.																																				.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	E	L	V	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S	P	V	R	I	V	D	I	A	L	G	D
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Sequence		F	V	F	I	D	R	I	.	.	.	.	.	.	.	.	.	.	.	.	N	H	F	K	G	G	Q	L	Q	A	E	V	V	R	K	G	K	G	K	N	.	.	.	V	L	I	V	H	E	N	L	L	I	D	A	F	H	Q	R	V	Q	G	I	K	Y	I	L	D	Q	D	Y	K	M	L	E	A	T	L	L	D	N
Template Known Secondary structure					G	G	G		.	.	.	.	.	.	.	.	.	.	.	.																T	T			S	.	.	.						S		T	T	S																							G	G	G	G	G	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template SS confidence
		140	.	.	.	.	.	.													.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.								.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.
Query Sequence		N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	G	R	.	.	.	.	.	.	.	N	L	K	T	P	L	T	V	V	S	F	Y	L	S	H	Q	V	Y	R	G	L	K	R	G	R	V	I	M	A	A	S	D	Q	M	V
Query Conservation																																								.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.													.	.												.	.	.	.	.	.	.																			.	.	.
Template Conservation								.	.	.	.	.	.	.													.	.																																					.	.	.
Template Sequence		D	K	K	F	I	D	.	.	.	.	.	.	.	L	I	K	E	L	S	I	D	S	I	I	C	.	.	S	N	D	L	L	A	I	N	V	L	G	I	V	Q	R	Y	H	F	K	V	P	A	E	I	Q	I	I	G	Y	D	N	I	P	F	S	E	.	.	.	M	T	Y	P	Q	I	T	T	I	D	Q	S	A	Y
Template Known Secondary structure								.	.	.	.	.	.	.						T							.	.	S	S														T	T			T	T	T	T						S	B			G	G	G	G	.	.	.	T	S	S	S			B
Template Predicted Secondary structure								.	.	.	.	.	.	.													.	.																																					.	.	.
Template SS confidence
		217	.	.	220	.	.								.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Q	G	E	L	A	V	E	Q	A	I	R	Q	L	Q	G	Q	S	V	S	D	N	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	L	G	E	I	A	V	S	Q	L	L	A	L	T	V	K	H	R	G	S	T	R	H	H
Template Known Secondary structure																				T	T
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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