Job Description P38683 Confidence 100.00% Date Thu Jan 5 11:58:14 GMT 2012 Rank 31 Aligned Residues 262 % Identity 15% Template c3brqA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		A	W	K	L	C	A	L	Y	P	S	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	F	P	D	L	Q	K	.	Q	V
Query Conservation																																																																															.
Alig confidence																																							.	.																																							.
Template Conservation																																							.	.
Template Sequence		T	Q	T	L	G	L	V	V	T	N	T	L	Y	H	Y	F	S	E	L	L	F	H	A	A	R	X	A	E	E	K	G	R	Q	L	L	L	A	.	.	D	G	K	H	S	A	E	E	E	R	Q	A	I	Q	Y	L	L	D	L	R	C	D	A	I	X	I	Y	P	R	F	L	S	V	D	E	I	D	D	I	I	D
Template Known Secondary structure											G	G	G																		T	T							.	.			T	T	S														T	T		S							S	S	S
Template Predicted Secondary structure																																							.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		A	S	L	P	V	I	E	L	V	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S	P	.	.	V	R	I	V
Query Conservation																																																																												.	.
Alig confidence																																													.	.	.																													.	.
Template Conservation																																													.	.	.
Template Sequence		A	H	S	Q	P	I	X	V	L	N	R	R	L	R	K	N	S	S	H	S	V	W	C	D	H	K	Q	T	S	F	N	A	V	A	E	L	I	N	A	G	H	Q	E	.	.	.	I	A	F	L	T	G	S	X	D	S	P	T	S	I	E	R	L	A	G	Y	K	D	A	L	A	Q	H	G	I	A	L	N	E	K
Template Known Secondary structure		T		S	S						S				S	S	S	G	G	G																				T	T			S	.	.	.								T	T																	T	T	T					G	G
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	G	R	.	.	.	.	.	N	L	K	T	P	L	T	V	V	S	F	Y	L	S	H	Q	V	Y	R	G	L	K	R	G	R	V	I	M	A	A	S
Query Conservation																																														.	.	.	.	.
Alig confidence																											.	.																		.	.	.	.	.																			.	.	.
Template Conservation																											.	.																																									.	.	.
Template Sequence		L	I	A	N	G	K	W	T	P	A	S	G	A	E	G	V	E	X	L	L	E	R	K	F	S	.	.	A	L	V	A	S	N	D	D	X	A	I	G	A	X	K	A	L	H	E	R	G	V	A	V	P	E	Q	V	S	V	I	G	F	D	D	I	A	I	A	P	.	.	.	Y	T	V	P	A	L	S	S	V	K
Template Known Secondary structure		G						S	S													T				S	.	.					S	S															T			T	T	T	T							S			T	T	G	G	.	.	.	G	S	S	S
Template Predicted Secondary structure																											.	.																																									.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	M	V	W	Q	G	E	L	A	V	E	Q	A	I	R	Q	L	Q	G	Q	S	V	S	D	N	V	S	P	P	I	L	V	L	T	P	K	N	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	V	T	E	X	I	Q	E	I	I	G	R	L	I	F	X	L	D	G	G	D	F	S	P	P	K	T	F	S	G	K	L	I	R	R	D	S	L	I
Template Known Secondary structure																				T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions