Job Description P38683 Confidence 100.00% Date Thu Jan 5 11:58:14 GMT 2012 Rank 10 Aligned Residues 278 % Identity 21% Template c2qvcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima Resolution 2.40 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		W	K	L	C	A	L	Y	P	S	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	F	P	D	L	Q	K	Q	V	A	.
Query Conservation																																																																																	.
Alig confidence								.																															.																																										.
Template Conservation								.																															.
Template Sequence		L	T	I	G	V	I	.	G	K	S	V	H	P	Y	W	S	Q	V	E	Q	G	V	K	A	A	G	K	A	L	G	V	D	T	K	F	F	V	.	P	Q	K	E	D	I	N	A	Q	L	Q	X	L	E	S	F	I	A	E	G	V	N	G	I	A	I	A	P	S	D	P	T	A	V	I	P	T	I	K	K	A	L
Template Known Secondary structure								.		S		S	S																		T								.		S	S																T	T		S							S	S	T	T	T	T
Template Predicted Secondary structure								.																															.
Template SS confidence
		32	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
				124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	S	L	P	V	I	E	L	V	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S	P	V	R	I	V	D
Query Conservation		.	.
Alig confidence		.	.																																												.
Template Conservation																																															.
Template Sequence		E	X	G	I	P	V	V	T	L	D	T	D	S	P	D	S	G	R	Y	V	Y	I	G	T	D	N	Y	Q	A	G	Y	T	A	G	L	I	X	K	E	L	L	G	G	K	G	.	K	V	V	I	G	T	G	S	L	T	A	X	N	S	L	Q	R	I	Q	G	F	K	D	A	I	K	D	S	E	I	E	I	V	D
Template Known Secondary structure			T	T							S	S			T	T	S			S																						T	T	T			.							S		S	S	S													T	T	T	T	S
Template Predicted Secondary structure																																															.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	.	.	.	E	G	R	N	L	K	T	P	L	T	V	V	S	F	Y	L	S	H	Q	V	Y	R	G	L	K	R	G	R	V	I	M	A	A	S	D	Q	M
Query Conservation																																										.	.	.
Alig confidence																																										.	.	.
Template Conservation
Template Sequence		I	L	N	D	E	E	D	G	A	R	A	V	S	L	A	E	A	A	L	N	A	H	P	D	L	D	A	F	F	G	V	Y	A	Y	N	G	P	A	Q	A	L	V	V	K	N	A	G	K	V	G	K	V	K	I	V	C	F	D	T	T	P	D	I	L	Q	Y	V	K	E	G	V	I	Q	A	T	X	G	Q	R	P
Template Known Secondary structure						T	T																	T	T							S	S	T	T												T	T		T	T	T	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.																.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Query Sequence		V	W	Q	G	E	L	A	V	E	Q	A	I	R	Q	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	S	V	S	D	N	V	S	P	P	I	L	V	L	T	P	K	N	A	D	R	E	H	.	.	I	R	R	S	L	S	P
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation
Template Sequence		Y	X	X	G	Y	L	S	V	T	V	L	Y	L	X	N	K	I	G	V	Q	N	T	L	X	X	L	P	K	V	K	V	D	G	K	V	D	Y	V	I	D	T	G	V	D	V	V	T	P	E	N	L	D	E	Y	L	K	K	X	E	E	L	G	I	P
Template Known Secondary structure																		T								T	S						T	T															T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions