Job Description P38683 Confidence 99.91% Date Thu Jan 5 11:58:14 GMT 2012 Rank 66 Aligned Residues 262 % Identity 12% Template c2qh8A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961 Resolution 2.20 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.					.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.
Query SS confidence																																			.	.	.	.
Query Sequence		R	A	W	K	L	C	A	L	Y	P	S	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	.	.	.	.	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	F	P	D	L
Query Conservation																																			.	.	.	.
Alig confidence								.																											.	.	.	.
Template Conservation								.
Template Sequence		K	T	A	K	V	A	.	V	S	Q	I	V	E	H	P	A	L	D	A	T	R	Q	G	L	L	D	G	L	K	A	K	G	Y	E	E	G	K	N	L	E	F	D	Y	K	T	A	Q	G	N	P	A	I	A	V	Q	I	A	R	Q	F	V	G	E	N	P	D	V	L	V	G	I	A	T	P	T	A	Q	A	L	V
Template Known Secondary structure								.				S	S																			T	T			B	T	T	T									T	T															T			S						S
Template Predicted Secondary structure								.
Template SS confidence
		26	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.											.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	K	Q	V	A	S	L	P	V	I	E	L	V	.	.	.	.	.	.	.	.	.	.	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F
Query Conservation															.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																								.	.	.																	.
Template Conservation																																																.	.	.																	.
Template Sequence		S	A	T	K	T	I	P	I	V	F	T	A	V	T	D	P	V	G	A	K	L	V	K	Q	L	E	Q	P	G	K	N	V	T	G	L	S	D	L	S	P	V	E	Q	H	V	E	.	.	.	L	I	K	E	I	L	P	N	V	K	S	I	G	V	V	Y	.	N	P	G	E	A	N	A	V	S	L	X	E	L	L
Template Known Secondary structure					S	S	S								S		T	T	T	T	T	S		S		S	S	S			S	S																.	.	.						S	T	T									.		T	T
Template Predicted Secondary structure																																																.	.	.																	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150				.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		R	A	A	I	A	G	S	P	V	R	I	V	D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	.	.	.	A	M	G	E	G	R	N	L	K	T	P	L	T	V	V	S	F	Y	L	S	H	Q	V	Y	R	G	L
Query Conservation																																																				.	.	.
Alig confidence																						.	.	.	.	.																										.	.	.																				.	.	.	.	.
Template Conservation																						.	.	.	.	.																																																.	.	.	.	.
Template Sequence		K	L	S	A	A	K	H	G	I	K	L	V	E	A	T	A	L	K	S	A	.	.	.	.	.	D	V	Q	S	A	T	Q	A	I	A	E	K	S	D	V	I	Y	A	L	I	D	N	T	V	A	S	A	I	E	G	X	I	V	A	A	N	Q	A	K	T	P	V	F	G	A	A	T	.	.	.	.	.	S	Y	V
Template Known Secondary structure								T	T									S	S	G	G	.	.	.	.	.	G									G	G	G		S						S						T	T											T	T						S	S		.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.																																																.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.						.	.	250
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300					.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																					.	.	.	.
Query SS confidence																																					.	.	.	.
Query Sequence		K	R	G	R	V	I	M	A	A	S	D	Q	M	V	W	Q	G	E	L	A	V	E	Q	A	I	R	Q	L	Q	G	Q	S	V	S	D	.	.	.	.	N	V	S	P	P	I	L	V	L	T	P	K	N	A	D	R	E	H	I	R
Query Conservation																																					.	.	.	.
Alig confidence							.																														.	.	.	.
Template Conservation							.
Template Sequence		E	R	G	A	I	.	A	S	L	G	F	D	Y	Y	Q	I	G	V	Q	T	A	D	Y	V	A	A	I	L	E	G	K	E	P	G	S	L	D	V	Q	V	A	K	G	S	D	L	V	I	N	K	T	A	A	E	Q	L	G	I	T
Template Known Secondary structure			T	T		S	.																							T	T			G	G	G	S																				T	T
Template Predicted Secondary structure							.
Template SS confidence
		251	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions