Job Description P38683 Confidence 100.00% Date Thu Jan 5 11:58:14 GMT 2012 Rank 22 Aligned Residues 268 % Identity 19% Template c2ioyB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein Resolution 1.90 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		W	K	L	C	A	L	Y	P	S	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	F	P	D	L	Q	K	Q	V	.	.
Query Conservation																																																																																.	.
Alig confidence																																											.	.																																				.	.
Template Conservation																																											.	.
Template Sequence		K	T	I	G	L	V	I	S	T	L	N	N	P	F	F	V	T	L	K	N	G	A	E	E	K	A	K	E	L	G	Y	K	I	I	V	E	D	S	Q	N	D	.	.	S	S	K	E	L	S	N	V	E	D	L	I	Q	Q	K	V	D	V	L	L	I	N	P	V	D	S	D	A	V	V	T	A	I	K	E	A	N
Template Known Secondary structure									S		S	S	S																		T									T	T		.	.														T	T		S							S	S	T	T	T
Template Predicted Secondary structure																																											.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
			123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200
Predicted Secondary structure		.																																																																											.
Query SS confidence		.																																																																											.
Query Sequence		.	A	S	L	P	V	I	E	L	V	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S	P	.	V	R	I	V
Query Conservation		.																																																																											.
Alig confidence		.																																													.																														.
Template Conservation																																															.
Template Sequence		S	K	N	I	P	V	I	T	I	D	R	S	A	N	G	G	D	V	V	C	H	I	A	S	D	N	V	K	G	G	E	M	A	A	E	F	I	A	K	A	L	K	G	K	G	.	N	V	V	E	L	E	G	I	P	G	A	S	A	A	R	D	R	G	K	G	F	D	E	A	I	A	K	Y	P	D	I	K	I	V
Template Known Secondary structure			T	T							S	S			S	S	S			S																						T	T	T			.									T	T																T	T		T	T
Template Predicted Secondary structure																																															.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		D	I	A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	.	.	A	A	E	A	A	M	G	E	G	R	N	L	K	T	P	L	T	V	V	S	F	Y	L	S	H	Q	V	Y	R	G	L	K	R	G	R	V	I	M	A	A	S	D	Q	M
Query Conservation																																				.	.
Alig confidence																																				.	.
Template Conservation
Template Sequence		A	K	Q	A	A	D	F	D	R	S	K	G	L	S	V	M	E	N	I	L	Q	A	Q	P	K	I	D	A	V	F	A	Q	N	D	E	M	A	L	G	A	I	K	A	I	E	A	A	N	R	Q	G	I	I	V	V	G	F	D	G	T	E	D	A	L	K	A	I	K	E	G	K	M	A	A	T	I	A	Q	Q	P
Template Known Secondary structure							T	T																	S								S	S														T	T		T	T																			T	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	Q	G	E	L	A	V	E	Q	A	I	R	Q	L	Q	G	Q	S	V	S	D	N	V	S	P	P	I	L	V	L	T	P	K	N	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	M	G	S	L	G	V	E	M	A	D	K	Y	L	K	G	E	K	I	P	N	F	I	P	A	E	L	K	L	I	T	K	E	N	V	Q
Template Known Secondary structure																	T	T					S											T	T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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