Job Description P38683 Confidence 99.91% Date Thu Jan 5 11:58:14 GMT 2012 Rank 67 Aligned Residues 229 % Identity 13% Template c2hqbA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans Resolution 2.70 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		K	L	C	A	L	Y	P	S	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	F	P	D	L	Q	.	K	Q	V	A	S
Query Conservation																																																																												.
Alig confidence									.	.																											.	.																																						.
Template Conservation									.	.																											.	.
Template Sequence		X	V	G	L	L	V	E	.	.	D	T	G	W	N	R	K	A	Y	E	G	L	L	N	I	H	S	N	L	D	V	D	V	V	L	E	.	.	E	G	V	N	S	E	Q	K	A	H	R	R	I	K	E	L	V	D	G	G	V	N	L	I	F	G	H	G	H	A	F	A	E	Y	F	S	T	I	H	N	Q	Y	P
Template Known Secondary structure									.	.					T														S								.	.					S														T	T								S	T								T	T	T	T	S		T
Template Predicted Secondary structure									.	.																											.	.
Template SS confidence
		1	.	.	.	.	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		L	P	V	I	E	L	V	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S	P	.	.	V	R	I	V	D	I
Query Conservation																																																																										.	.
Alig confidence																																											.	.												.	.	.	.															.	.
Template Conservation																																											.	.												.	.	.	.
Template Sequence		D	V	H	F	V	S	F	N	G	E	V	K	G	E	N	I	T	S	L	H	F	E	G	Y	A	X	G	Y	F	G	G	X	V	A	A	S	X	S	E	T	H	.	.	K	V	G	V	I	A	A	F	P	W	Q	.	.	.	.	P	E	V	E	G	F	V	D	G	A	K	Y	X	N	E	S	E	A	F	V	R	Y
Template Known Secondary structure		T	S						S					S	S	S																						T		S	S	S	.	.							S		T	T		.	.	.	.													T	T
Template Predicted Secondary structure																																											.	.												.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		A	L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	G	R	N	L	K	T	.	P	L	T	V	V	S	F	Y	L	S	H	Q	V	Y	R	G	L	K	R	G	R	V	I	M	A	A	S	D	Q	M	V	W	Q
Query Conservation																																																.
Alig confidence																										.	.	.	.																			.												.	.	.
Template Conservation																										.	.	.	.																															.	.	.
Template Sequence		V	G	E	W	T	D	A	D	K	A	L	E	L	F	Q	E	L	Q	K	E	Q	V	D	V	.	.	.	.	F	Y	P	A	G	D	G	Y	H	V	P	V	V	E	A	I	K	D	Q	G	D	F	A	I	G	Y	V	G	D	Q	.	.	.	A	D	L	G	G	S	T	I	L	T	S	T	V	Q	H	V	D	D	L
Template Known Secondary structure			S	S	S	S														T	T	T				.	.	.	.						T	T	T												T								S			.	.	.	S	S	S	S		S	S
Template Predicted Secondary structure																										.	.	.	.																															.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	L	A	V	E	Q	A	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	V	L	V	A	K	R	F	Q	E
Template Known Secondary structure									T	T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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