Job Description P38683 Confidence 99.96% Date Thu Jan 5 11:58:14 GMT 2012 Rank 57 Aligned Residues 244 % Identity 15% Template c2h0aA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus Resolution 2.80 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	C	A	L	Y	P	S	L	K	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	F	P	D	L	Q	K	Q	V	A	S	L
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Sequence		T	V	S	V	L	L	P	F	V	A	T	E	F	Y	R	R	L	V	E	G	I	E	G	V	L	L	E	Q	R	Y	D	L	A	L	F	P	I	L	S	L	A	R	.	.	.	.	.	.	.	.	.	.	.	L	K	Y	L	T	D	G	L	I	L	A	S	Y	D	L	T	R	L	.	.	.	.	.	P	T	E	R
Template Known Secondary structure										S																	G	G	G	T										S				.	.	.	.	.	.	.	.	.	.	.						S						S							.	.	.	.	.	S		S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.												.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		P	V	I	E	L	V	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S	P	V	R	I	.	.	V	D	I	A
Query Conservation																																																																												.	.
Alig confidence													.	.	.																												.																																	.	.
Template Conservation													.	.	.																												.
Template Sequence		P	V	V	L	V	D	A	Q	N	P	R	.	.	.	Y	D	S	V	Y	L	D	N	R	L	G	G	R	L	A	G	A	Y	L	A	R	F	P	G	P	I	F	.	A	I	A	V	E	E	E	P	D	R	R	T	V	F	A	E	R	M	A	G	F	Q	E	A	L	K	E	A	G	R	P	F	S	P	D	R	L	Y
Template Known Secondary structure							S	S			T	T	.	.	.	S							S												T	T	S	S	S				.							S																					T	T					G	G	G
Template Predicted Secondary structure													.	.	.																												.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		L	G	D	N	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	A	M	G	E	G	R	N	L	K	T	.	.	.	.	.	P	L	T	V	V	S	F	Y	L	S	H	Q	V	Y	R	G	L	K	R	G	R	V	I	M	A	A	S	D	Q	M
Query Conservation																																															.	.	.	.	.
Alig confidence																																															.	.	.	.	.																.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.
Template Sequence		I	T	R	H	S	Q	E	G	G	R	L	A	L	R	H	F	L	E	K	A	S	P	P	L	N	V	F	A	G	A	D	Q	V	A	L	G	V	L	E	E	A	V	R	L	G	L	T	P	G	R	D	V	R	V	L	G	F	D	G	H	P	F	A	E	E	.	.	.	.	.	A	G	L	S	T	I	A	Q	P	V
Template Known Secondary structure					S	S													T	T			S	S						S	S													T	T	S		T	T	T	T	S							S			T					.	.	.	.	.		T
Template Predicted Secondary structure																																																																			.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.						.	.	290	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		V	W	Q	G	E	L	A	V	E	Q	A	I	R	Q	L	Q	G	Q	S	V	.	S	D	N	V	S	P	P	I	L	V	L	T	P	K	N	A
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		E	A	M	G	A	R	A	A	Q	L	L	L	E	R	M	R	G	Y	Q	G	P	P	R	E	V	R	F	E	P	V	L	V	E	R	A	S	T
Template Known Secondary structure																	T	T			S	S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions