Job Description P38683 Confidence 99.94% Date Thu Jan 5 11:58:14 GMT 2012 Rank 63 Aligned Residues 244 % Identity 10% Template c2fqxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine Resolution 1.70 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		R	A	W	K	L	C	A	L	Y	P	S	L	K	.	.	.	D	S	Y	W	L	S	L	N	Y	G	M	Q	E	A	A	R	R	Y	G	V	D	L	K	V	L	E	A	G	G	Y	S	Q	L	A	T	Q	Q	A	Q	I	D	Q	C	K	Q	W	G	A	E	A	I	L	L	G	S	S	T	T	S	F	P	D	L	Q
Query Conservation															.	.	.
Alig confidence															.	.	.																																	.	.	.
Template Conservation																																																		.	.	.
Template Sequence		G	D	F	V	V	G	M	V	T	D	S	G	D	I	D	D	K	S	F	N	Q	Q	V	W	E	G	I	S	R	F	A	Q	E	N	N	A	K	C	K	Y	V	T	A	S	T	D	A	E	.	.	.	Y	V	P	S	L	S	A	F	A	D	E	N	M	G	L	V	V	A	C	G	S	F	L	V	E	A	V	I	E
Template Known Secondary structure											S	S	S		T	T	S	S	S																T	T										S	G	G	G	.	.	.											T	T		S						S	T	T	T
Template Predicted Secondary structure																																																		.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure						.	.																																																																										.
Query SS confidence						.	.																																																																										.
Query Sequence		K	Q	V	A	.	.	S	L	P	V	I	E	L	V	N	A	I	D	A	P	Q	V	K	S	R	V	G	V	P	W	F	Q	M	G	Y	Q	P	G	R	Y	L	V	Q	W	A	H	G	K	P	L	N	V	L	L	M	P	G	P	D	N	A	G	G	S	K	E	M	V	E	G	F	R	A	A	I	A	G	S	P	.
Query Conservation						.	.																																																																										.
Alig confidence						.	.																																																																										.
Template Conservation
Template Sequence		T	S	A	R	F	P	K	Q	K	F	L	V	I	D	A	V	V	Q	D	R	D	N	V	V	S	A	V	F	G	Q	N	E	G	S	F	L	V	G	V	A	A	A	L	K	A	K	E	A	G	K	S	A	V	G	F	I	V	G	M	E	L	G	M	M	P	L	F	E	A	G	F	E	A	G	V	K	A	V	D	P
Template Known Secondary structure							T	T	S						S	S				S		T	T																										T	T									S			S	T	T	T																T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
			197	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.					.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure		.												.																																.	.	.	.																				.	.
Query SS confidence		.												.																																.	.	.	.																				.	.
Query Sequence		.	V	R	I	V	D	I	A	L	G	D	N	.	D	I	E	I	Q	R	N	L	L	Q	E	M	L	E	R	H	P	E	I	D	V	V	A	G	T	A	I	A	A	E	A	.	.	.	.	A	M	G	E	G	R	N	L	K	T	P	L	T	V	V	S	F	Y	L	.	.	S	H	Q	V	Y	R	G	L	K	R	G
Query Conservation		.												.																																.	.	.	.																				.	.
Alig confidence		.												.																			.	.												.	.	.	.																				.	.
Template Conservation																																	.	.
Template Sequence		D	I	Q	V	V	V	E	V	A	N	T	F	S	D	P	Q	K	G	Q	A	L	A	A	K	L	Y	D	S	G	V	N	.	.	V	I	F	Q	V	A	G	G	T	G	N	G	V	I	K	E	A	R	D	R	R	L	N	G	Q	D	V	W	V	I	G	V	D	R	D	Q	Y	M	D	G	V	Y	D	G	S	K	S
Template Known Secondary structure		T									S		S	S															T	T			.	.							G	G	G														T	T										S			G	G	G	G	B		S	S	S		B
Template Predicted Secondary structure																																	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	I	M	A	A	S	D	Q	M	V	W	Q	G	E	L	A	V	E	Q	A	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	L	T	S	M	V	K	R	A	D	V	A	A	E	R	I	S	K	M	A	Y	D
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions